View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_59 (Length: 247)
Name: NF15324_low_59
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 54770599 - 54770744
Alignment:
| Q |
84 |
tatatatatatttgatgagttggtaagattgcgtaggaatttgattgtgaaggaacggagtggcttgcatttcgccaataccaaatcaacaaccattgtc |
183 |
Q |
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| T |
54770599 |
tatatatatatatgatgagttggtaagattgggtaggaatttgattgtgaaggaacggagtggcttgcatttcgccaataccaaatcaacaaccattgtc |
54770698 |
T |
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| Q |
184 |
taaaattgtaaaccaacctggctgactttaccattttgaccttacc |
229 |
Q |
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| T |
54770699 |
taaaattgcaaaccaacctggctgactttaccattttgaccttacc |
54770744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 54770488 - 54770577
Alignment:
| Q |
1 |
ttcatctcaaccaatgattttagggtgctgatgtaactcttgcaccaaatctttttcattcatggtcaatgggagtgtctatgtatatatatat |
94 |
Q |
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| T |
54770488 |
ttcatctcaaccaatgattttagggtgctaatgtaactcttgcaccaaatcttt----ttcatggtcaatgggagtgtctatatatatatatat |
54770577 |
T |
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