View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_6 (Length: 578)

Name: NF15324_low_6
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_6
NF15324_low_6
[»] scaffold0038 (4 HSPs)
scaffold0038 (23-562)||(27450-27989)
scaffold0038 (47-559)||(42971-43491)
scaffold0038 (60-562)||(116798-117294)
scaffold0038 (227-562)||(34727-35062)
[»] chr6 (72 HSPs)
chr6 (88-562)||(28185368-28185846)
chr6 (23-562)||(28226952-28227491)
chr6 (33-562)||(28181116-28181644)
chr6 (47-559)||(28242809-28243329)
chr6 (60-562)||(28325483-28325979)
chr6 (60-560)||(28297414-28297896)
chr6 (60-560)||(28514177-28514659)
chr6 (227-562)||(28234566-28234900)
chr6 (340-562)||(27677577-27677799)
chr6 (424-562)||(27678948-27679086)
chr6 (340-549)||(27592983-27593192)
chr6 (425-562)||(28139543-28139680)
chr6 (233-543)||(27337921-27338231)
chr6 (233-543)||(27398661-27398971)
chr6 (424-549)||(27706449-27706574)
chr6 (362-562)||(25579721-25579921)
chr6 (218-474)||(26949751-26950007)
chr6 (283-562)||(27718285-27718564)
chr6 (235-562)||(31284290-31284617)
chr6 (383-525)||(26823879-26824021)
chr6 (327-549)||(27604655-27604877)
chr6 (283-549)||(27610908-27611174)
chr6 (423-557)||(28149945-28150078)
chr6 (241-473)||(27214508-27214743)
chr6 (241-473)||(27234485-27234720)
chr6 (373-549)||(26142880-26143056)
chr6 (305-525)||(28098297-28098517)
chr6 (423-558)||(26341980-26342115)
chr6 (229-523)||(26848701-26848995)
chr6 (340-562)||(27724808-27725030)
chr6 (362-525)||(26048884-26049047)
chr6 (362-525)||(26070053-26070216)
chr6 (424-562)||(25481744-25481882)
chr6 (230-440)||(26617746-26617956)
chr6 (230-440)||(26723674-26723884)
chr6 (218-384)||(26959346-26959512)
chr6 (429-562)||(26622978-26623111)
chr6 (429-562)||(26728956-26729089)
chr6 (264-465)||(26811608-26811809)
chr6 (214-525)||(26861655-26861963)
chr6 (362-562)||(26055928-26056128)
chr6 (362-562)||(26075898-26076098)
chr6 (390-557)||(25071666-25071833)
chr6 (374-549)||(25538555-25538730)
chr6 (23-82)||(28185872-28185931)
chr6 (218-320)||(26635934-26636036)
chr6 (218-320)||(26741900-26742002)
chr6 (424-525)||(26646518-26646619)
chr6 (424-525)||(26752486-26752587)
chr6 (429-562)||(27698546-27698679)
chr6 (234-562)||(28781141-28781469)
chr6 (234-562)||(28786280-28786608)
chr6 (234-562)||(28792401-28792729)
chr6 (435-549)||(2184303-2184417)
chr6 (365-558)||(26937100-26937293)
chr6 (305-562)||(29826029-29826286)
chr6 (429-525)||(26656028-26656124)
chr6 (429-525)||(26761999-26762095)
chr6 (429-525)||(27531249-27531345)
chr6 (429-562)||(26802444-26802577)
chr6 (429-550)||(26884177-26884300)
chr6 (218-282)||(26975334-26975398)
chr6 (219-287)||(28098199-28098267)
chr6 (214-322)||(28139783-28139891)
chr6 (426-473)||(27665166-27665213)
chr6 (228-298)||(26937372-26937442)
chr6 (234-323)||(26656230-26656319)
chr6 (234-323)||(26762201-26762290)
chr6 (434-523)||(26975093-26975182)
chr6 (214-255)||(28150235-28150276)
chr6 (419-523)||(26635731-26635835)
chr6 (419-523)||(26741697-26741801)
[»] scaffold0019 (1 HSPs)
scaffold0019 (28-562)||(57944-58467)
[»] chr4 (7 HSPs)
chr4 (338-557)||(5090915-5091134)
chr4 (424-525)||(18679601-18679702)
chr4 (424-525)||(18699434-18699535)
chr4 (424-525)||(18731538-18731639)
chr4 (424-525)||(18724119-18724220)
chr4 (424-525)||(18655511-18655612)
chr4 (221-297)||(5090792-5090868)
[»] chr1 (3 HSPs)
chr1 (234-548)||(28127523-28127837)
chr1 (419-525)||(268386-268492)
chr1 (401-525)||(28164373-28164497)
[»] chr8 (3 HSPs)
chr8 (424-523)||(29273817-29273916)
chr8 (445-522)||(14794613-14794690)
chr8 (445-522)||(14801883-14801960)
[»] scaffold0277 (2 HSPs)
scaffold0277 (234-562)||(4528-4856)
scaffold0277 (362-562)||(13617-13817)
[»] scaffold0349 (2 HSPs)
scaffold0349 (424-562)||(3468-3607)
scaffold0349 (340-562)||(14319-14540)
[»] chr2 (3 HSPs)
chr2 (341-558)||(3279694-3279914)
chr2 (228-384)||(17993535-17993691)
chr2 (218-298)||(3279969-3280049)
[»] scaffold0419 (1 HSPs)
scaffold0419 (424-562)||(7527-7665)


Alignment Details
Target: scaffold0038 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 23 - 562
Target Start/End: Complemental strand, 27989 - 27450
Alignment:
Q  23 cacagattcacaaccacatcaatttattaataatagctgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaa 122  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||| |||    
T  27989 cacaaattcacaatcatatcaatttattaataatagttgtataaatacaattcaaatattgttttgacatacaagtaa-ttaaacttgttaagaataaaa 27891  T
Q  123 attatattttctaattaaactgtaagatgaaacagttagaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtgag-tggggt 221  Q
    || |||||||| | |||||  || |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||  |  |||    
T  27890 ataatattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggt 27791  T
Q  222 acctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaactt 321  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||| |    
T  27790 acctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacct 27691  T
Q  322 ctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  27690 ctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattt 27591  T
Q  422 tccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaa 521  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||| |||||||    
T  27590 tccttgaagcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaa 27491  T
Q  522 tggctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    || | |||  |||||| | ||||||||| ||||||||||||    
T  27490 tgaccttgaaaagtgatgatgttatttcatcacctccttga 27450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 47 - 559
Target Start/End: Complemental strand, 43491 - 42971
Alignment:
Q  47 tattaataatagctgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgta 146  Q
    |||| ||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||  | |||||||||| || |||||||    
T  43491 tattgataatagttgtataaatacaattcaaatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgta 43393  T
Q  147 agatgaaacagttagaaaatagaatattaaag-------tgatatgaca-tatgtaagaatgtaaaacatgagtga-gtggggtacctaggattgaaatg 237  Q
    |||||||   |||||||||||||| |||||||       | |||||  | ||||||||||||  |||||||||| | |||| |||||||| | |||||||    
T  43392 agatgaattggttagaaaatagaaaattaaagaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatg 43293  T
Q  238 gtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatcc 337  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||| ||||| ||| ||    
T  43292 gtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagcc 43193  T
Q  338 agtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaa 437  Q
    ||||||||||||||||||||  | ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||| |||| |||||||||    
T  43192 agtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaa 43093  T
Q  438 tgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtga 537  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||| |||  ||||||    
T  43092 tgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtga 42993  T
Q  538 cggtgttatttcgtcacctcct 559  Q
     |||||||||| ||||||||||    
T  42992 tggtgttattttgtcacctcct 42971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 60 - 562
Target Start/End: Complemental strand, 117294 - 116798
Alignment:
Q  60 tgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgtaagatgaaacagtt 159  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |||||| | | || |||||||||||||| | |||    
T  117294 tgtatgaatacaattcaaatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcggtt 117195  T
Q  160 agaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtga-gtggggtacctaggattgaaatggtggccagagaagttagcagt 258  Q
    ||||||||||| |||||||  ||||   |||||||||||   ||||||| ||| | || || |||| |||| ||||||||||||| ||||||||||||||    
T  117194 agaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagcagt 117098  T
Q  259 ttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgccc 358  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||| || ||||    ||| |||| ||||| ||  |||||||||||||||||||||||    
T  117097 ttgagtaagagccatcttccatttctgcaacctctccatgctatccgtgctatt----aacctctcaatatgctcggccagtgctttaccataactgccc 117002  T
Q  359 ttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatcca 458  Q
    |||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||| |||||| |||||||||||||| ||||| |||||||||||||    
T  117001 ttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcatcca 116902  T
Q  459 agcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctcc 558  Q
    ||||||| |||||||| || |||||| ||||||| |  ||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||     
T  116901 agcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcg 116802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 227 - 562
Target Start/End: Complemental strand, 35062 - 34727
Alignment:
Q  227 ggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctcta 326  Q
    |||||||||||||||||||| |||||||  ||||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||    
T  35062 ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttcttta 34963  T
Q  327 tatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttcctt 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||   |||||||    
T  34962 tatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttcctt 34863  T
Q  427 gaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggct 526  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||     
T  34862 gaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggcc 34763  T
Q  527 ttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    |||  |||||| ||||||||||| || |||||||||    
T  34762 ttgaaaagtgatggtgttatttcatctcctccttga 34727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 72)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 88 - 562
Target Start/End: Complemental strand, 28185846 - 28185368
Alignment:
Q  88 gacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgtaagatgaaacagttagaaaatagaatattaaagtgatatgac 187  Q
    ||||||||||||||||||||||||||||||| ||||  |||| ||||| |||||| ||||||||||||||| ||| ||||||||||||||| ||||||||    
T  28185846 gacatacaagtaacttacacttgttaagaataaaaagaatatattctatttaaaccgtaagatgaaacagtaagataatagaatattaaagagatatgac 28185747  T
Q  188 atatgtaagaatgtaaaacatgagtga-gtggggtacctag---gattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttc 283  Q
    ||||||||||||||||||||||||||| |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28185746 atatgtaagaatgtaaaacatgagtgaagtggggtacccagcaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttc 28185647  T
Q  284 tgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggtt 383  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28185646 tgcaacctctccatgctatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggtt 28185547  T
Q  384 ccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaatt 483  Q
    ||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| || |||||    
T  28185546 ccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagttaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataatt 28185447  T
Q  484 gttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    | |||||||||||||||||||||||||||||||||||||||| |||  |||||| | ||||||||| ||||||||||||    
T  28185446 gatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttga 28185368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 23 - 562
Target Start/End: Complemental strand, 28227491 - 28226952
Alignment:
Q  23 cacagattcacaaccacatcaatttattaataatagctgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaa 122  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||| |||    
T  28227491 cacaaattcacaatcatatcaatttattaataatagttgtataaatacaattcaaatattgttttgacatacaagtaa-ttaaacttgttaagaataaaa 28227393  T
Q  123 attatattttctaattaaactgtaagatgaaacagttagaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtgag-tggggt 221  Q
    || |||||||| | |||||  || |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||  |  |||    
T  28227392 ataatattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggt 28227293  T
Q  222 acctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaactt 321  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||||||| | |||||||||| |||||||||||||||| |    
T  28227292 acctaggattgatttggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccatgctatgcttgttattttggaacct 28227193  T
Q  322 ctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  28227192 ctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattt 28227093  T
Q  422 tccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaa 521  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||| |||||||    
T  28227092 tccttgaagcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaa 28226993  T
Q  522 tggctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    || | |||  |||||| | ||||||||| ||||||||||||    
T  28226992 tgaccttgaaaagtgatgatgttatttcatcacctccttga 28226952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 33 - 562
Target Start/End: Complemental strand, 28181644 - 28181116
Alignment:
Q  33 caaccacatcaatttattaataatagctgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatatttt 132  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||| ||||  ||||||||||||||| |||||||||||||||||| ||| | |||||      
T  28181644 caaccacatcaattt-ttaataatagttgtataa-tacaattcaaatattgatttgacatacaagtaccttacacttgttaagaataaaattaatattac 28181547  T
Q  133 ctaattaaactgtaagatgaaacagttagaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtg-agtggggtacctaggatt 231  Q
    ||| || |||| |||||| |||||||| |||||||||| ||| |||  |||| || |||||  |||||||||||||||||| | |  |||||||||||||    
T  28181546 ctatttcaactataagataaaacagttcgaaaatagaacattcaagaaatatcacctatgtttgaatgtaaaacatgagtgcactacggtacctaggatt 28181447  T
Q  232 gaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatga 331  Q
    ||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||    
T  28181446 gatttggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatga 28181347  T
Q  332 tcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||   ||||||||||||    
T  28181346 tcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagc 28181247  T
Q  432 agtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcg 531  Q
    ||||||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||      
T  28181246 agtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaa 28181147  T
Q  532 aagtgacggtgttatttcgtcacctccttga 562  Q
    |||||| | ||||||||| ||||||||||||    
T  28181146 aagtgatgatgttatttcttcacctccttga 28181116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 47 - 559
Target Start/End: Complemental strand, 28243329 - 28242809
Alignment:
Q  47 tattaataatagctgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgta 146  Q
    |||| ||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||  | |||||||||| || |||||||    
T  28243329 tattgataatagttgtataaatacaattcaaatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgta 28243231  T
Q  147 agatgaaacagttagaaaatagaatattaaag-------tgatatgaca-tatgtaagaatgtaaaacatgagtga-gtggggtacctaggattgaaatg 237  Q
    |||||||   |||||||||||||| |||||||       | |||||  | ||||||||||||  |||||||||| | |||| |||||||| | |||||||    
T  28243230 agatgaattggttagaaaatagaaaattaaagaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatg 28243131  T
Q  238 gtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatcc 337  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||| ||||| ||| ||    
T  28243130 gtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagcc 28243031  T
Q  338 agtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaa 437  Q
    ||||||||||||||||||||  | ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||| |||| |||||||||    
T  28243030 agtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaa 28242931  T
Q  438 tgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtga 537  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||| |||  ||||||    
T  28242930 tgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtga 28242831  T
Q  538 cggtgttatttcgtcacctcct 559  Q
     |||||||||| ||||||||||    
T  28242830 tggtgttattttgtcacctcct 28242809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 60 - 562
Target Start/End: Complemental strand, 28325979 - 28325483
Alignment:
Q  60 tgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgtaagatgaaacagtt 159  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |||||| | | || |||||||||||||| | |||    
T  28325979 tgtatgaatacaattcaaatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcggtt 28325880  T
Q  160 agaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtga-gtggggtacctaggattgaaatggtggccagagaagttagcagt 258  Q
    ||||||||||| |||||||  ||||   |||||||||||   ||||||| ||| | || || |||| |||| ||||||||||||| ||||||||||||||    
T  28325879 agaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagcagt 28325783  T
Q  259 ttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgccc 358  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||| || ||||    ||| |||| ||||| ||  |||||||||||||||||||||||    
T  28325782 ttgagtaagagccatcttccatttctgcaacctctccatgctatccgtgctatt----aacctctcaatatgctcggccagtgctttaccataactgccc 28325687  T
Q  359 ttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatcca 458  Q
    |||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||| |||||| |||||||||||||| ||||| |||||||||||||    
T  28325686 ttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcatcca 28325587  T
Q  459 agcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctcc 558  Q
    ||||||| |||||||| || |||||| ||||||| |  ||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||     
T  28325586 agcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcg 28325487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 60 - 560
Target Start/End: Original strand, 28297414 - 28297896
Alignment:
Q  60 tgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgtaagatgaaacagtt 159  Q
    ||||| ||||||| |||| |||| |||||||||| || |||||| ||||||||||||||  |||| |||||||||| ||||||  || |||||||| |||    
T  28297414 tgtatgaatacaaatcaaatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacggtt 28297512  T
Q  160 agaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtga-gtggggtacctaggattgaaatggtggccagagaagttagcagt 258  Q
     ||||||||||||||                  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28297513 ggaaaatagaatatt------------------taagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagt 28297594  T
Q  259 ttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgccc 358  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||     
T  28297595 ttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatatgatcatccagtgctttagcataacttcca 28297694  T
Q  359 ttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatcca 458  Q
    |  ||||||||||| |||||||||||||||||||| || || ||||||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||    
T  28297695 tgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagttcgtcca 28297794  T
Q  459 agcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctcc 558  Q
    |||||||||||||||| || |||||| |||| ||||| |||||||||||||||| ||||||||||   |||  |||||| ||||||||||||||||||||    
T  28297795 agcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcc 28297894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 60 - 560
Target Start/End: Complemental strand, 28514659 - 28514177
Alignment:
Q  60 tgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattatattttctaattaaactgtaagatgaaacagtt 159  Q
    ||||| ||||||| |||| |||| |||||||||| || |||||| ||||||||||||||  |||| |||||||||| ||||||  || |||||||| |||    
T  28514659 tgtatgaatacaaatcaaatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacggtt 28514561  T
Q  160 agaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtga-gtggggtacctaggattgaaatggtggccagagaagttagcagt 258  Q
     ||||||||||||||                  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28514560 ggaaaatagaatatt------------------taagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagt 28514479  T
Q  259 ttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgccc 358  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||     
T  28514478 ttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatatgatcatccagtgctttagcataacttcca 28514379  T
Q  359 ttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatcca 458  Q
    |  ||||||||||| |||||||||||||||||||| || || ||||||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||    
T  28514378 tgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagttcgtcca 28514279  T
Q  459 agcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctcc 558  Q
    |||||||||||||||| || |||||| |||| ||||| |||||||||||||||| ||||||||||   |||  |||||| ||||||||||||||||||||    
T  28514278 agcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcc 28514179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 227 - 562
Target Start/End: Complemental strand, 28234900 - 28234566
Alignment:
Q  227 ggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctcta 326  Q
    |||||||||||||||||||| |||||||  ||||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||    
T  28234900 ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttcttta 28234801  T
Q  327 tatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttcctt 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  28234800 tatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctc 28234701  T
Q  427 gaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggct 526  Q
    |||||| | ||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||     
T  28234700 gaagca-taaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggcc 28234602  T
Q  527 ttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    |||  |||||| ||||||||||| || |||||||||    
T  28234601 ttgaaaagtgatggtgttatttcatctcctccttga 28234566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 562
Target Start/End: Original strand, 27677577 - 27677799
Alignment:
Q  340 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatg 439  Q
    ||||| ||||||||| || || |||||||||||   || |||||||||| || |||| |  |||| ||| ||||| |  |||  |||| |||||||||||    
T  27677577 tgcttcaccataactacctttctgatgtcgcacaatagtaggttccacagcaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatg 27677676  T
Q  440 atgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacg 539  Q
    ||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || | ||| ||||||||||||||||||||||| ||| ||||||| |    
T  27677677 atgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatg 27677776  T
Q  540 gtgttatttcgtcacctccttga 562  Q
    |||| ||||| || |||| ||||    
T  27677777 gtgtgatttcatcccctctttga 27677799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 27679086 - 27678948
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || ||||| |||||||||||||||||||||    
T  27679086 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatg 27678987  T
Q  524 gctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    || ||| ||||||| ||||| ||||| || |||| ||||    
T  27678986 gccttgagaagtgatggtgtgatttcatctcctctttga 27678948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 340 - 549
Target Start/End: Original strand, 27592983 - 27593192
Alignment:
Q  340 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatg 439  Q
    ||||| ||||||||| || || ||||||||||| |||||||| |||||| || |||| |  ||||||||  |||| |  |||  |||| |||| ||||||    
T  27592983 tgcttcaccataactacctttatgatgtcgcacatgagaaggatccacaccaaagaaaacaggcaaaacagggcgaccctttgtcttgtagcaatgaatg 27593082  T
Q  440 atgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacg 539  Q
    |||||  ||||||| ||||| ||||| ||||||||||| || ||| |||| || || ||||| ||||||||||||||||||||||| ||| ||||||| |    
T  27593083 atgtggtcaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatg 27593182  T
Q  540 gtgttatttc 549  Q
    |||| |||||    
T  27593183 gtgtgatttc 27593192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 425 - 562
Target Start/End: Complemental strand, 28139680 - 28139543
Alignment:
Q  425 ttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatgg 524  Q
    |||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| || ||| | || || || || |||||||||||||| ||||||||||    
T  28139680 ttgaagcagtcaatgatgtggacaagttcgtccaagcaaaacgaagaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatgg 28139581  T
Q  525 ctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    ||||    |||||||||| |||||||||||||||||||    
T  28139580 cttttacgagtgacggtgatatttcgtcacctccttga 28139543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 233 - 543
Target Start/End: Original strand, 27337921 - 27338231
Alignment:
Q  233 aaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgat 332  Q
    ||||||||||| ||||||||||||| ||| ||||||||  |||||||||||| |||| |||||||| | |||||||||||||||||||| |||  ||| |    
T  27337921 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27338020  T
Q  333 catccag-tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagc 431  Q
     |   || ||| | ||||||||| ||  | |||||||| ||||||| ||| ||| || ||||||| |  ||||||||    |  |   ||  |||| |||    
T  27338021 tagtaagatgc-tcaccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagc 27338119  T
Q  432 agtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcg 531  Q
    ||||||||||||| |||||||| |||||||||||||||||||| || || ||   ||| || | |||||| ||||||||||||||||||||||| |||      
T  27338120 agtgaatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgac 27338219  T
Q  532 aagtgacggtgt 543  Q
    |||||| |||||    
T  27338220 aagtgatggtgt 27338231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 233 - 543
Target Start/End: Original strand, 27398661 - 27398971
Alignment:
Q  233 aaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgat 332  Q
    ||||||||||| ||||||||||||| ||| ||||||||  |||||||||||| |||| |||||||| | |||||||||||||||||||| |||  ||| |    
T  27398661 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27398760  T
Q  333 catccag-tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagc 431  Q
     |   || ||| | ||||||||| ||  | |||||||| ||||||| ||| ||| || ||||||| |  ||||||||    |  |   ||  |||| |||    
T  27398761 tagtaagatgc-tcaccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagc 27398859  T
Q  432 agtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcg 531  Q
    ||||||||||||| |||||||| |||||||||||||||||||| || || ||   ||| || | |||||| ||||||||||||||||||||||| |||      
T  27398860 agtgaatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgac 27398959  T
Q  532 aagtgacggtgt 543  Q
    |||||| |||||    
T  27398960 aagtgatggtgt 27398971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 424 - 549
Target Start/End: Original strand, 27706449 - 27706574
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| ||  || |||| || || ||||| |||||||||||||||||||||    
T  27706449 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggtgatagaaaacacaggaataaaaatcctagactcttcaatg 27706548  T
Q  524 gctttgcgaagtgacggtgttatttc 549  Q
    || ||| ||||||| ||||| |||||    
T  27706549 gccttgagaagtgatggtgtgatttc 27706574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 362 - 562
Target Start/End: Complemental strand, 25579921 - 25579721
Alignment:
Q  362 tgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagc 461  Q
    |||||||| | ||||| |||||||||||||||||| |  ||||| |||| ||  || |||  |||| |||||||||||||||| |||||||| ||||| |    
T  25579921 tgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 25579822  T
Q  462 aaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttg 561  Q
    ||||||||||||| || || |||  ||| || | |||||| ||||||||||| ||||||||||| |||  |||||| ||||| ||||| || |||| |||    
T  25579821 aaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttg 25579722  T
Q  562 a 562  Q
    |    
T  25579721 a 25579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 218 - 474
Target Start/End: Complemental strand, 26950007 - 26949751
Alignment:
Q  218 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttgga 317  Q
    ||||||| | |||||||||||| |||||| |||| ||||  ||   | |||||  ||||||||||| |||||  ||||||| | |  ||| | |||||||    
T  26950007 gggtacccaagattgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttgga 26949908  T
Q  318 acttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcct 417  Q
    || |||||  ||| | | | ||||||| |||||||||    || ||||||||||||||||||||||| ||||||||||| | ||||| ||| ||||| |     
T  26949907 acctctcttcatgcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacc 26949808  T
Q  418 attttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaaga 474  Q
     |||||||||||| |||||||||| || |||||||| || || ||||||||||||||    
T  26949807 tttttccttgaagtagtgaatgatatggacaagttcgtctaaacaaaatgaagaaga 26949751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 283 - 562
Target Start/End: Original strand, 27718285 - 27718564
Alignment:
Q  283 ctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggt 382  Q
    ||||||| |||||||| ||| ||| | |||||| ||| ||| |  ||| ||| ||| ||||| ||||||||| || || ||||||||||||| || ||||    
T  27718285 ctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggt 27718384  T
Q  383 tccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaat 482  Q
    |||||  |  |||| |  |||||||| ||||| |  |||  |||| |||||||||| ||||| |||||||| ||||| ||||| ||||||||||| || |    
T  27718385 tccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27718484  T
Q  483 tgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    || |||| || || ||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| ||||    
T  27718485 tgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttga 27718564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 235 - 562
Target Start/End: Complemental strand, 31284617 - 31284290
Alignment:
Q  235 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatca 334  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||| | |||||   |||  | |||| ||||||| |||||  ||| | |    
T  31284617 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 31284518  T
Q  335 tccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagt 434  Q
     ||| |||||  |||||||| ||  | ||||||||||| |||||||| |||||  || |||| |  |||||||| ||||| | ||||| |||  |  |||    
T  31284517 gccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 31284418  T
Q  435 gaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaag 534  Q
    |||||||||| |||||||| ||||| ||||| || |||||||| || |||  ||| || ||||| || ||||||||||||||||||||||| |||   ||    
T  31284417 gaatgatgtggacaagttcgtccaaacaaaacgacgaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgag 31284318  T
Q  535 tgacggtgttatttcgtcacctccttga 562  Q
    ||| ||||| ||||| || |||| ||||    
T  31284317 tgatggtgtgatttcatcccctctttga 31284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 383 - 525
Target Start/End: Complemental strand, 26824021 - 26823879
Alignment:
Q  383 tccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaat 482  Q
    |||||| ||||||| |  |||||||| |||||||  ||||||||| ||  | |||||||||| |||||||| ||||| ||||||||||||||||| || |    
T  26824021 tccacaccatagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 26823922  T
Q  483 tgttagacaagacgggaatgaaaatcctagactcttcaatggc 525  Q
    ||  ||| || || ||||| |||||||||||||||||||||||    
T  26823921 tggcagaaaacacaggaataaaaatcctagactcttcaatggc 26823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 549
Target Start/End: Original strand, 27604655 - 27604877
Alignment:
Q  327 tatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttcctt 426  Q
    |||| ||| ||| ||||| ||| ||||| || || ||||||||||| ||||||||||||||| || |||| |  |||||||| | ||| |  |||  | |    
T  27604655 tatgctcagccaatgcttgaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgt 27604754  T
Q  427 gaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggct 526  Q
    | |||| ||||||||||| |||||||||||||| ||||| ||||||||||| || ||| |||| || || ||||| |||||||| || || ||||||||     
T  27604755 gtagcaatgaatgatgtgaacaagttcatccaaacaaaaggaagaagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggcc 27604854  T
Q  527 ttgcgaagtgacggtgttatttc 549  Q
    ||| ||||||  ||||| |||||    
T  27604855 ttgagaagtgctggtgtgatttc 27604877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 549
Target Start/End: Original strand, 27610908 - 27611174
Alignment:
Q  283 ctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggt 382  Q
    ||||||| |||||||| ||| ||| | |||||| ||| ||| |  ||| ||| ||| ||||| ||||||||| || || ||||||||||| | || ||||    
T  27610908 ctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggt 27611007  T
Q  383 tccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaat 482  Q
    |||||  |  |||| |  |||||||| ||||| |  |||  |||| |||||||||| ||||| |||||||| ||||| ||||| ||||||||||| || |    
T  27611008 tccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27611107  T
Q  483 tgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttc 549  Q
    || |||| || || ||||| ||||||||||| || |||||||| ||| | ||||| ||||| |||||    
T  27611108 tgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttc 27611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 557
Target Start/End: Complemental strand, 28150078 - 28149945
Alignment:
Q  423 ccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaat 522  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||||||||| |  || ||| |||| ||||  |||||||||||||| |||||||||||    
T  28150078 ccttgaagcagtgaataatgtggacaagttcgtccaaacaaaatgaagaagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaat 28149979  T
Q  523 ggctttgcgaagtgacggtgttatttcgtcacctc 557  Q
    ||| ||| | ||||| ||||| |||||||| ||||    
T  28149978 ggccttgag-agtgatggtgtgatttcgtcccctc 28149945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 473
Target Start/End: Complemental strand, 27214743 - 27214508
Alignment:
Q  241 gccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagt 340  Q
    |||||| |||||||||| |||  |||||||  |||||||||||||||||  ||||||| | |||||||||||||| ||| |||||  ||| | | | ||     
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27214644  T
Q  341 gctttaccataactgcccttgt---gatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaa 437  Q
    |||| ||||||||||   ||||   ||||||||| |||||||||||| ||  ||||||| |  || | ||| ||||| |  ||||||||| |||| |||     
T  27214643 gcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgag 27214544  T
Q  438 tgatgtgcacaagttcatccaagcaaaatgaagaag 473  Q
    ||||||| |||||||| ||||| |||||||||||||    
T  27214543 tgatgtggacaagttcgtccaaacaaaatgaagaag 27214508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 473
Target Start/End: Original strand, 27234485 - 27234720
Alignment:
Q  241 gccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagt 340  Q
    |||||| |||||||||| |||  |||||||  |||||||||||||||||  ||||||| | |||||||||||||| ||| |||||  ||| | | | ||     
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27234584  T
Q  341 gctttaccataactgcccttgt---gatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaa 437  Q
    |||| ||||||||||   ||||   ||||||||| |||||||||||| ||  ||||||| |  || | ||| ||||| |  ||||||||| |||| |||     
T  27234585 gcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgag 27234684  T
Q  438 tgatgtgcacaagttcatccaagcaaaatgaagaag 473  Q
    ||||||| |||||||| ||||| |||||||||||||    
T  27234685 tgatgtggacaagttcgtccaaacaaaatgaagaag 27234720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 373 - 549
Target Start/End: Complemental strand, 26143056 - 26142880
Alignment:
Q  373 gtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaa 472  Q
    ||||| |||||||||||||||||| |  || || |||| ||  || |||  |||| |||||||||||||||| |||||||| ||||| ||||||||||||    
T  26143056 gtgagtaggttccacatcatagaaaacgggaaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaa 26142957  T
Q  473 gaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttc 549  Q
    || || || |||  ||| || | |||||| ||||||||||| ||||||||||| |||  |||||| ||||| |||||    
T  26142956 gatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttc 26142880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 305 - 525
Target Start/End: Original strand, 28098297 - 28098517
Alignment:
Q  305 ttgttattttggaacttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggca 404  Q
    ||||||||||||||| |||||  ||| | | | | ||||| ||||||||| ||| | |||||||||||||||||||||||||| ||| | || || || |    
T  28098297 ttgttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaaataggaa 28098396  T
Q  405 aaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaa 504  Q
    |||| | ||  |  ||||| | | | | |||||||||||| |||||||||||||| |||||  ||||||| || || || ||||| ||||| ||||| ||    
T  28098397 aaacgaagcaacccttttcttcgtaacggtgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagttcttagagaagaccggaattaa 28098496  T
Q  505 aatcctagactcttcaatggc 525  Q
    |||||| |||||||| |||||    
T  28098497 aatcctggactcttcgatggc 28098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 558
Target Start/End: Original strand, 26341980 - 26342115
Alignment:
Q  423 ccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaat 522  Q
    |||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| || || ||| | || || |  |||||||||||||| |||||||||||    
T  26341980 ccttgaagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaat 26342079  T
Q  523 ggctttgcgaagtgacggtgttatttcgtcacctcc 558  Q
    |||||||  ||||||  |||| |||| |||||||||    
T  26342080 ggctttgacaagtgattgtgtgattttgtcacctcc 26342115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 229 - 523
Target Start/End: Complemental strand, 26848995 - 26848701
Alignment:
Q  229 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctata 328  Q
    |||||||||||||||||| ||||||||||  ||  |||||||  ||||||||||  ||||   ||||||||| |||||||||||||| |||  ||||  |    
T  26848995 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttca 26848896  T
Q  329 tgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttga 428  Q
    || | | | ||||||| ||||||||| |  || ||||||||||| ||||||||||| |   ||||||| |  || | ||| | ||  |  |||||||||     
T  26848895 tgcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttgg 26848796  T
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| ||||||||||| |||||||| ||||| ||||| ||||||| ||| || || | ||| || ||  ||||| ||||||| || |||||||||    
T  26848795 agcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagttctcagagaatacaagaatggaaatcctcgagtcttcaatg 26848701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 340 - 562
Target Start/End: Original strand, 27724808 - 27725030
Alignment:
Q  340 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatg 439  Q
    ||||| ||||||||| || || ||||||||||||| || |||||||||  |  |||| |  |||||||| ||||| |  |||  |||| ||||||||||     
T  27724808 tgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaatt 27724907  T
Q  440 atgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacg 539  Q
    ||||| |||||||| ||||| ||||| |||||| |||| || ||| |||| || || ||||| ||||||||||| || |||||||| ||| | ||||| |    
T  27724908 atgtggacaagttcgtccaaacaaaacgaagaataggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatg 27725007  T
Q  540 gtgttatttcgtcacctccttga 562  Q
    |||| ||||| || |||| ||||    
T  27725008 gtgtgatttcatctcctctttga 27725030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 525
Target Start/End: Complemental strand, 26049047 - 26048884
Alignment:
Q  362 tgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagc 461  Q
    |||||||| | ||||| ||||||||||||||| || |  ||||| |||| ||  || |||  |||| |||||||||||||||| |||||||| ||||| |    
T  26049047 tgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 26048948  T
Q  462 aaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggc 525  Q
    ||||||||||||| || || |||  ||| || | |||||| ||||||||||| ||||| |||||    
T  26048947 aaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggc 26048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 525
Target Start/End: Complemental strand, 26070216 - 26070053
Alignment:
Q  362 tgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagc 461  Q
    |||||||| | ||||| ||||||||||||||| || |  ||||| |||| ||  || |||  |||| |||||||||||||||| |||||||| ||||| |    
T  26070216 tgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 26070117  T
Q  462 aaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggc 525  Q
    ||||||||||||| || || |||  ||| || | |||||| ||||||||||| ||||| |||||    
T  26070116 aaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggc 26070053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 25481882 - 25481744
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||||| |||||||| ||||| |||||||||||||| || || |||  ||| || | ||||||  |||||||||| |||||||||    
T  25481882 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatg 25481783  T
Q  524 gctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    || |||  |||||| ||||| ||||| || |||| ||||    
T  25481782 gccttgacaagtgatggtgtgatttcatctcctctttga 25481744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 440
Target Start/End: Complemental strand, 26617956 - 26617746
Alignment:
Q  230 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatat 329  Q
    |||||||| | |||||| ||||||  || |||  |||||||  |||||||||||||||||  ||||||| | |||||||||||||||||| | |||  |     
T  26617956 ttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaa 26617857  T
Q  330 gatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaa 429  Q
      |||   ||||||| |||||| |||   |||| |||||| || | ||||||||||||||||||||| | ||| | ||| ||||| ||||||||||| ||    
T  26617856 actcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaacaaggcgactattttcctttaa 26617757  T
Q  430 gcagtgaatga 440  Q
    | |||||||||    
T  26617756 gtagtgaatga 26617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 440
Target Start/End: Complemental strand, 26723884 - 26723674
Alignment:
Q  230 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatat 329  Q
    |||||||| | |||||| ||||||  || |||  |||||||  |||||||||||||||||  ||||||| | |||||||||||||||||| | |||  |     
T  26723884 ttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaa 26723785  T
Q  330 gatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaa 429  Q
      |||   ||||||| |||||| |||   |||| |||||| || | ||||||||||||||||||||| | ||| | ||| ||||| ||||||||||| ||    
T  26723784 actcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaacaaggcgactattttcctttaa 26723685  T
Q  430 gcagtgaatga 440  Q
    | |||||||||    
T  26723684 gtagtgaatga 26723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 26959512 - 26959346
Alignment:
Q  218 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttgga 317  Q
    ||||||| | ||||||||||||||||||| |||||||||| |||  |||||||  ||||||||||| |||||  ||||||| | |||||| ||||||| |    
T  26959512 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttgaa 26959413  T
Q  318 acttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttc 384  Q
    ||| ||||  ||| | | | || |||| |||||||||||| ||  | | |||||| |||||||||||    
T  26959412 actgctcttcatgcttagcaagcgcttcaccataactgccatttagttttcgcacatgagaaggttc 26959346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 429 - 562
Target Start/End: Complemental strand, 26623111 - 26622978
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggcttt 528  Q
    |||||||||||||||| |||||||||||||| |||||||||||| | || || |||  ||| || || ||||| ||||||||||||||||| || || ||    
T  26623111 agcagtgaatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcatt 26623012  T
Q  529 gcgaagtgacggtgttatttcgtcacctccttga 562  Q
    |  |||||| ||| | |||||||| |||| ||||    
T  26623011 gtcaagtgatggtttgatttcgtcccctctttga 26622978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 429 - 562
Target Start/End: Complemental strand, 26729089 - 26728956
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggcttt 528  Q
    |||||||||||||||| |||||||||||||| |||||||||||| | || || |||  ||| || || ||||| ||||||||||||||||| || || ||    
T  26729089 agcagtgaatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcatt 26728990  T
Q  529 gcgaagtgacggtgttatttcgtcacctccttga 562  Q
    |  |||||| ||| | |||||||| |||| ||||    
T  26728989 gtcaagtgatggtttgatttcgtcccctctttga 26728956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 465
Target Start/End: Complemental strand, 26811809 - 26811608
Alignment:
Q  264 taagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatcatccagtgctttaccataactgcccttgtg 363  Q
    |||||||  |||||||||||||||||   |||||| | |||||||||||||||||| | |||  |   |||   ||||||| ||||||  ||   || ||    
T  26811809 taagagctatcttccatttctgcaaccgatccatgttttccttgttattttggaacatttcttcaaactcagtaagtgcttcaccatacttgttattttg 26811710  T
Q  364 atgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaa 463  Q
    ||||||||||||||||||||||||| ||||||| | ||| | ||| ||||| |  |||||||||||| ||| ||||||||| ||||| ||||| || |||    
T  26811709 atgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttccttgaagtagttaatgatgtggacaagctcatctaaacaa 26811610  T
Q  464 aa 465  Q
    ||    
T  26811609 aa 26811608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 214 - 525
Target Start/End: Complemental strand, 26861963 - 26861655
Alignment:
Q  214 agtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattt 313  Q
    ||||||||||| |||| | ||||||| ||| || |||||||||| |||  | ||||||   |||||| |||||||| |||||||| ||||| | | ||||    
T  26861963 agtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattt 26861864  T
Q  314 tggaacttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggc 413  Q
    || ||| | | |  ||| | | ||| ||||| ||||||| | ||  | ||||||||||| | || ||| ||||   ||||||| |  |||||||| | ||    
T  26861863 tgaaaccttttttcatgcttagccaatgcttcaccataaatacctctatgatgtcgcacattagtaggatccatgccatagaaaacaggcaaaacgacgc 26861764  T
Q  414 gcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctaga 513  Q
    | |  |||||||||   |||| |||||| || |||||||||||||| |||||||| |||||||| || |||  ||| || || ||||||||||| |||||    
T  26861763 gacccttttccttg---cagttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttggcagaaaacacaggaatgaaaattctaga 26861667  T
Q  514 ctcttcaatggc 525  Q
    ||||||||||||    
T  26861666 ctcttcaatggc 26861655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 562
Target Start/End: Complemental strand, 26056128 - 26055928
Alignment:
Q  362 tgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagc 461  Q
    |||||||| | ||||| |||||||||||||||||| |  ||||| |||| ||  || |||   ||| |||||||||||||||| |||||||| ||||| |    
T  26056128 tgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagcagtgaatgatgtggacaagttcgtccaaac 26056029  T
Q  462 aaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttg 561  Q
    ||||||||||||| || || |||  ||| || | |||||| ||||||| ||| ||||| ||||| |||  |||||| | ||| ||||| || |||| |||    
T  26056028 aaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttg 26055929  T
Q  562 a 562  Q
    |    
T  26055928 a 26055928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 562
Target Start/End: Complemental strand, 26076098 - 26075898
Alignment:
Q  362 tgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagc 461  Q
    |||||||| | ||||| |||||||||||||||||| |  ||||| |||| ||  || |||   ||| |||||||||||||||| |||||||| ||||| |    
T  26076098 tgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagcagtgaatgatgtggacaagttcgtccaaac 26075999  T
Q  462 aaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttg 561  Q
    ||||||||||||| || || |||  ||| || | |||||| ||||||| ||| ||||| ||||| |||  |||||| | ||| ||||| || |||| |||    
T  26075998 aaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttg 26075899  T
Q  562 a 562  Q
    |    
T  26075898 a 26075898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 390 - 557
Target Start/End: Complemental strand, 25071833 - 25071666
Alignment:
Q  390 catagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttaga 489  Q
    ||||||| ||||| | ||| ||||| || |||||||||||| ||||||||||||| |||||||| || || |||||||||||||| || || |  |||||    
T  25071833 catagaaaattggtagaacaaggcgactcttttccttgaagtagtgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagtctttaga 25071734  T
Q  490 caagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctc 557  Q
     ||||||  ||||  ||| || || |||||||||   ||||| || || ||||| |||||||||||||    
T  25071733 gaagacgataatggcaattctcgaatcttcaatgctcttgcggagcgaaggtgtgatttcgtcacctc 25071666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 549
Target Start/End: Complemental strand, 25538730 - 25538555
Alignment:
Q  374 tgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaag 473  Q
    |||| |||||||||||||||||| |  ||||| |||| ||  || |||  |||| ||||||||||||| || |||||||| ||||| |||||||||||||    
T  25538730 tgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatctggacaagttcgtccaaacaaaatgaagaag 25538631  T
Q  474 aggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttc 549  Q
    | || || |||  ||| || | |||||| ||||| ||||| ||||| ||||| |||  |||||| ||||| |||||    
T  25538630 atgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtgatttc 25538555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 28185931 - 28185872
Alignment:
Q  23 cacagattcacaaccacatcaatttattaataatagctgtataaatacaattcaattatt 82  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  28185931 cacaaattcacagccacatcaatttattaataatagttgtataaatacaattcaaatatt 28185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 26636036 - 26635934
Alignment:
Q  218 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttgga 317  Q
    ||||||| | ||||||||||||||||||| |||||||||| |||  |||||||  ||||||||||| |||||  ||||||| | |||||| ||||||| |    
T  26636036 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaa 26635937  T
Q  318 act 320  Q
    |||    
T  26635936 act 26635934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 26742002 - 26741900
Alignment:
Q  218 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttgga 317  Q
    ||||||| | ||||||||||||||||||| |||||||||| |||  |||||||  ||||||||||| |||||  ||||||| | |||||| ||||||| |    
T  26742002 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaa 26741903  T
Q  318 act 320  Q
    |||    
T  26741902 act 26741900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 525
Target Start/End: Complemental strand, 26646619 - 26646518
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||| ||||||||||| |||||||| ||||| ||||||  ||||||||| || ||| |||| || || ||||| ||||||||||| |||||||||    
T  26646619 cttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatg 26646520  T
Q  524 gc 525  Q
    ||    
T  26646519 gc 26646518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 525
Target Start/End: Complemental strand, 26752587 - 26752486
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||| ||||||||||| |||||||| ||||| ||||||  ||||||||| || ||| |||| || || ||||| ||||||||||| |||||||||    
T  26752587 cttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatg 26752488  T
Q  524 gc 525  Q
    ||    
T  26752487 gc 26752486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 562
Target Start/End: Original strand, 27698546 - 27698679
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggcttt 528  Q
    |||||||||| ||||| |||||||| ||||| |||||||||||||| || || |||  ||| || || ||||| ||||||||||| || |||||||| ||    
T  27698546 agcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatggcctt 27698645  T
Q  529 gcgaagtgacggtgttatttcgtcacctccttga 562  Q
    | | ||||| ||||| ||||| || |||| ||||    
T  27698646 gaggagtgatggtgtgatttcatctcctctttga 27698679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 234 - 562
Target Start/End: Complemental strand, 28781469 - 28781141
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatc 333  Q
    |||||| ||| || |||||||||| ||| || |||||   ||||||||  |||||| |||||||| ||||||| | |||||| ||| ||| |  |||  |    
T  28781469 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgtcc 28781370  T
Q  334 atccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcag 433  Q
    | ||| ||||| |||||||   ||  | ||||||||||| | || ||| |||||| || |||| |  |||||||| ||||| |  |||  |||| ||||     
T  28781369 agccaatgcttcaccataaggacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaa 28781270  T
Q  434 tgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaa 533  Q
    ||||| ||||| |||||||| ||||||||||||   |||| ||| || ||| |||| || || ||||| ||||||||||| ||||| ||||| ||| | |    
T  28781269 tgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgagga 28781170  T
Q  534 gtgacggtgttatttcgtcacctccttga 562  Q
    |||| ||||| ||||| || |||| ||||    
T  28781169 gtgatggtgtgatttcatctcctctttga 28781141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 234 - 562
Target Start/End: Complemental strand, 28786608 - 28786280
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatc 333  Q
    |||||| ||| || |||||||||| ||| || |||||   ||||||||  |||||| |||||||| ||||||| | |||||| ||| ||| |  |||  |    
T  28786608 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccc 28786509  T
Q  334 atccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcag 433  Q
    | ||| ||||| ||||||||  ||  | ||||||||||| | || ||| || ||| || |||| |  |||||||| ||||| |  |||  |||| ||||     
T  28786508 agccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaa 28786409  T
Q  434 tgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaa 533  Q
    ||||| ||||| |||||||| ||||||||||||   || | |||||| ||| |||| || || ||||| ||||||||||| ||||| ||||| ||| | |    
T  28786408 tgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgagga 28786309  T
Q  534 gtgacggtgttatttcgtcacctccttga 562  Q
    |||| ||||| ||||| || |||| ||||    
T  28786308 gtgatggtgtgatttcatctcctctttga 28786280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 234 - 562
Target Start/End: Complemental strand, 28792729 - 28792401
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatc 333  Q
    |||||| ||| || |||||||||| ||| || |||||   ||||||||  |||||| |||||||| ||||||| | |||||| ||| ||| |  |||  |    
T  28792729 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccc 28792630  T
Q  334 atccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcag 433  Q
    | ||| ||||| ||||||||  ||  | ||||||||||| | || ||| || ||| || |||| |  |||||||| ||||| |  |||  |||| ||||     
T  28792629 agccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaa 28792530  T
Q  434 tgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaa 533  Q
    ||||| ||||| |||||||| ||||||||||||   || | |||||| ||| |||| || || ||||| ||||||||||| ||||| ||||| ||| | |    
T  28792529 tgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgagga 28792430  T
Q  534 gtgacggtgttatttcgtcacctccttga 562  Q
    |||| ||||| ||||| || |||| ||||    
T  28792429 gtgatggtgtgatttcatctcctctttga 28792401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 549
Target Start/End: Complemental strand, 2184417 - 2184303
Alignment:
Q  435 gaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaag 534  Q
    |||||||||| |||||||| ||||| |||||||||||||| || || || || || || || || |||||||| || |||||||||||||||||   |||    
T  2184417 gaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagttctttgagaaaacagggatgaaaattctggactcttcaatggctttcataag 2184318  T
Q  535 tgacggtgttatttc 549  Q
    ||| | |||||||||    
T  2184317 tgatgctgttatttc 2184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 558
Target Start/End: Complemental strand, 26937293 - 26937100
Alignment:
Q  365 tgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaa 464  Q
    ||||| ||||||||||| ||||| |||||||| || ||||||| |||  | |  |||  ||||||||||| || |||||| |||||||| ||||| ||||    
T  26937293 tgtcgaacgtgagaaggatccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacgatgtggacaagttcgtccaaacaaa 26937194  T
Q  465 atgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctcc 558  Q
    ||||||||| ||| || ||| |||| || || || |||  |||||  || |||||||| || |||  |||||| ||||| ||||| || |||||    
T  26937193 atgaagaagtggcatagttgatagagaatacaggtatggcaatcccggaatcttcaattgccttgacaagtgatggtgtgatttcttctcctcc 26937100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 562
Target Start/End: Complemental strand, 29826286 - 29826029
Alignment:
Q  305 ttgttattttggaacttctctatatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggca 404  Q
    |||||||||| |||| |||||  | |||||  || | ||||||||||||| ||  | ||||||||||| |||||||| |||||||||||||| || ||||    
T  29826286 ttgttatttttgaacctctcttcaagatcagtcattcctttaccataactcccagtctgatgtcgcacatgagaaggatccacatcatagaaaataggca 29826187  T
Q  405 aaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaa 504  Q
    |||| || || |  ||   |||||  || | ||  || |||||||||||||| |||||||| |||||||| || |||||| |||| || |  ||||||      
T  29826186 aaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggc 29826087  T
Q  505 aatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
     |||||||| |||| ||| || ||   |||||| ||||| |||||||| |||| ||||    
T  29826086 tatcctagattcttgaattgccttcacaagtgagggtgtgatttcgtcccctctttga 29826029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 26656124 - 26656028
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggc 525  Q
    |||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||  ||| || | |||||| |||||||| || |||||||||||    
T  26656124 agcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggc 26656028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 26762095 - 26761999
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggc 525  Q
    |||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||  ||| || | |||||| |||||||| || |||||||||||    
T  26762095 agcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggc 26761999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 27531249 - 27531345
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggc 525  Q
    |||| ||| ||||||| |||||||| ||||| |||||||||||||| || || || | ||| || |||||||| ||||||||||| | |||||||||    
T  27531249 agcaatgagtgatgtgaacaagttcgtccaaacaaaatgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggc 27531345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 562
Target Start/End: Complemental strand, 26802577 - 26802444
Alignment:
Q  429 agcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggcttt 528  Q
    |||| ||||| ||||| |||||||| ||||||||||||   |||||||| || ||| |||| || || ||||| ||||| ||||| ||||||||||| ||    
T  26802577 agcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagaggcatagttgatagaaaacacaggaataaaaattctagattcttcaatggcctt 26802478  T
Q  529 gcgaagtgacggtgttatttcgtcacctccttga 562  Q
    |   ||||| ||||| ||||| || |||| ||||    
T  26802477 gatgagtgatggtgtgatttcatctcctctttga 26802444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 550
Target Start/End: Complemental strand, 26884300 - 26884177
Alignment:
Q  429 agcagtgaatga--tgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggct 526  Q
    ||||||||||||  |||| |||||||| ||||| |||||||||||||| || || ||| |||| || |  ||||| ||||| ||||| |||||||||||     
T  26884300 agcagtgaatgacatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggcc 26884201  T
Q  527 ttgcgaagtgacggtgttatttcg 550  Q
    |||   ||||| ||||| ||||||    
T  26884200 ttgatgagtgatggtgtgatttcg 26884177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 26975398 - 26975334
Alignment:
Q  218 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccattt 282  Q
    ||||||| | ||||||||||||||||||| |||||||||| |||  |||||||  ||||||||||    
T  26975398 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 26975334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 28098199 - 28098267
Alignment:
Q  219 ggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgca 287  Q
    ||||||||||||||||||||||||| || |||||||| | |||  |||||||  |||||||||| ||||    
T  28098199 ggtacctaggattgaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 28139891 - 28139783
Alignment:
Q  214 agtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattt 313  Q
    ||||||||||| |  |||||||||||||||||| |||||||| | ||   |||||||||  ||||||||  ||||| | ||||||  |||||| | ||||    
T  28139891 agtggggtacccaaaattgaaatggtggccagaaaagttagctgctttgttaagagcacatttccattttagcaacctatccatgtcatccttttgattt 28139792  T
Q  314 tggaacttc 322  Q
    |||||||||    
T  28139791 tggaacttc 28139783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 473
Target Start/End: Original strand, 27665166 - 27665213
Alignment:
Q  426 tgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaag 473  Q
    ||||||| ||||||||||| ||||||||||| || |||||||||||||    
T  27665166 tgaagcaatgaatgatgtggacaagttcatctaaacaaaatgaagaag 27665213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 26937442 - 26937372
Alignment:
Q  228 gattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatg 298  Q
    ||||||||||||||||||| ||||| || | |||  |||||||  ||||||||||| ||||| ||||||||    
T  26937442 gattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatg 26937372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 26656319 - 26656230
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttct 323  Q
    |||||| |||||| ||||| |||| ||  || |||||  ||||||||| || |||| ||| |||| | ||||||||||||||||||||||    
T  26656319 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttct 26656230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 26762290 - 26762201
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttct 323  Q
    |||||| |||||| ||||| |||| ||  || |||||  ||||||||| || |||| ||| |||| | ||||||||||||||||||||||    
T  26762290 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttct 26762201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 523
Target Start/End: Complemental strand, 26975182 - 26975093
Alignment:
Q  434 tgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    ||||||||||| |||||||| ||||| |||||||||||||| || || |  ||||| ||||||  ||||  |||||| || |||||||||    
T  26975182 tgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagtctttagagaagacgataatggtaatcctcgagtcttcaatg 26975093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #70
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 28150276 - 28150235
Alignment:
Q  214 agtggggtacctaggattgaaatggtggccagagaagttagc 255  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  28150276 agtgggatacctaggattgaaatggtggccggacaagttagc 28150235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #71
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 523
Target Start/End: Complemental strand, 26635835 - 26635731
Alignment:
Q  419 ttttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactctt 518  Q
    ||||| ||| |||| ||||||||||| |||||||||||||| |||||  ||||||| || || |  ||||| || |||  ||||  |||||| |||||||    
T  26635835 ttttcattggagcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactctt 26635736  T
Q  519 caatg 523  Q
    |||||    
T  26635735 caatg 26635731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #72
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 523
Target Start/End: Complemental strand, 26741801 - 26741697
Alignment:
Q  419 ttttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactctt 518  Q
    ||||| ||| |||| ||||||||||| |||||||||||||| |||||  ||||||| || || |  ||||| || |||  ||||  |||||| |||||||    
T  26741801 ttttcattggagcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactctt 26741702  T
Q  519 caatg 523  Q
    |||||    
T  26741701 caatg 26741697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 28 - 562
Target Start/End: Original strand, 57944 - 58467
Alignment:
Q  28 attcacaaccacatcaatttattaataatagctgtataaatacaattcaattattattttgacatacaagtaacttacacttgttaagaattaaaattat 127  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||||| |||| |||||||           ||||||||||||||||| ||||| ||    
T  57944 attcacaaccgcgtcaatttattaataatagttgtataaatacaattcaaatattgttttgac-----------ttacacttgttaagaataaaaat-at 58031  T
Q  128 attttctaattaaactgtaagatgaaacagttagaaaatagaatattaaagtgatatgacatatgtaagaatgtaaaacatgagtga-gtggggtaccta 226  Q
     ||||||| ||||||| ||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  58032 tttttctatttaaactttaatatgaaacggttataaaatagaatattaaagagatatgacatatgtaagaatgtaaaacatgagtaaagtggggtaccta 58131  T
Q  227 ggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctcta 326  Q
    | |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||| |||||||||||| ||||||||||| |||| |    
T  58132 gtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaa 58231  T
Q  327 tatgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttcctt 426  Q
    |||| ||  | ||||||||||||||||| || |  |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |||||     
T  58232 tatgctcggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctc 58331  T
Q  427 gaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggct 526  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||| ||||||     
T  58332 gaagcagtgaatgatgtggacaagttcgttcaagcaaaatgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggcc 58431  T
Q  527 ttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    |||  |||||| ||||||||||||||||||||||||    
T  58432 ttgaaaagtgatggtgttatttcgtcacctccttga 58467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 338 - 557
Target Start/End: Original strand, 5090915 - 5091134
Alignment:
Q  338 agtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaa 437  Q
    ||||||| ||||||||| ||  | |||| |||||| ||||||||||||||| ||||||| || |||||||| ||||  | |||||||||| |||||||||    
T  5090915 agtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattttccttggagcagtgaa 5091014  T
Q  438 tgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtga 537  Q
    | || || ||||||||||| || ||||| |||||||| || || | |||||| || |||  ||||| |||| |||| |||| |||||| ||| |||||||    
T  5091015 taatatggacaagttcatctaaacaaaacgaagaagaagcatagtggttagagaaaacgataatgacaatcttagattcttgaatggccttgagaagtga 5091114  T
Q  538 cggtgttatttcgtcacctc 557  Q
    ||||||||||| ||| ||||    
T  5091115 cggtgttatttggtctcctc 5091134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 424 - 525
Target Start/End: Original strand, 18679601 - 18679702
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || |||||||| ||||||||||||||||||    
T  18679601 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatg 18679700  T
Q  524 gc 525  Q
    ||    
T  18679701 gc 18679702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 424 - 525
Target Start/End: Original strand, 18699434 - 18699535
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || |||||||| ||||||||||||||||||    
T  18699434 cttgtagcagtgaatgatgtgaacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatg 18699533  T
Q  524 gc 525  Q
    ||    
T  18699534 gc 18699535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 424 - 525
Target Start/End: Original strand, 18731538 - 18731639
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| ||||||| |||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || |||||||| ||||||||||||||||||    
T  18731538 cttgtagcagtgcatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatg 18731637  T
Q  524 gc 525  Q
    ||    
T  18731638 gc 18731639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 525
Target Start/End: Original strand, 18724119 - 18724220
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| ||||||| |||||||| |||||||| | ||| ||||||||||||||||| || ||| |||| || || |||||||| ||||||||||||||||||    
T  18724119 cttgtagcagtgcatgatgtggacaagttcgttcaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatg 18724218  T
Q  524 gc 525  Q
    ||    
T  18724219 gc 18724220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 424 - 525
Target Start/End: Original strand, 18655511 - 18655612
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||| | |||||||| ||||| ||||||||||||||||| || ||| |||| || || ||||| || ||||||||||||| ||||    
T  18655511 cttgtagcagtgaatgatgcggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatg 18655610  T
Q  524 gc 525  Q
    ||    
T  18655611 gc 18655612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 5090792 - 5090868
Alignment:
Q  221 tacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccat 297  Q
    ||||||| ||||||||||| |||||| || ||||| | |||  |||||||  ||| ||||||||||||| |||||||    
T  5090792 tacctagcattgaaatggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccat 5090868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 234 - 548
Target Start/End: Original strand, 28127523 - 28127837
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatc 333  Q
    |||||| ||| || |||||||||| ||| || |||||  |||||||||  |||||   ||||||| | | |||||||||||||||| |||||  ||| |     
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctccatgctt 28127622  T
Q  334 atccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcag 433  Q
    | | ||  ||| ||||||||| ||  | |||| |||||| | || ||| |||||  || |||| |  |||||||||||||| |  |||  |||| |||||    
T  28127623 agcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgccaaagaaaacaggcaaaactaggcgaccctttgtcttgtagcag 28127722  T
Q  434 tgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaa 533  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| || ||| |||| || || ||||| ||||| ||||| ||||||||||| ||   ||    
T  28127723 tgaatgatgtgcacaagttcgtccaaacaaaatgaagaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggcctttaaaa 28127822  T
Q  534 gtgacggtgttattt 548  Q
    |||||||||| ||||    
T  28127823 gtgacggtgtgattt 28127837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 419 - 525
Target Start/End: Original strand, 268386 - 268492
Alignment:
Q  419 ttttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactctt 518  Q
    |||| |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || ||||| ||||||||||||||||    
T  268386 tttttcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactctt 268485  T
Q  519 caatggc 525  Q
    |||||||    
T  268486 caatggc 268492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 525
Target Start/End: Original strand, 28164373 - 28164497
Alignment:
Q  401 ggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaa 500  Q
    |||||||||||||| |  |||  |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || ||||    
T  28164373 ggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagataacacaggaa 28164472  T
Q  501 tgaaaatcctagactcttcaatggc 525  Q
    | ||||| | ||| | |||||||||    
T  28164473 taaaaattcaagatttttcaatggc 28164497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 424 - 523
Target Start/End: Original strand, 29273817 - 29273916
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||| || || ||||| ||||| |||||||||||||||    
T  29273817 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatg 29273916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 522
Target Start/End: Complemental strand, 14794690 - 14794613
Alignment:
Q  445 cacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaat 522  Q
    ||||||||| || ||||||||||||||||| || ||||| |  || || || || ||||||||||| |||||||||||    
T  14794690 cacaagttcgtctaagcaaaatgaagaagatgcataattttctgataaaactgggatgaaaatcctggactcttcaat 14794613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 522
Target Start/End: Complemental strand, 14801960 - 14801883
Alignment:
Q  445 cacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaat 522  Q
    ||||||||| || ||||||||||||||||| || ||||| |  || || || || ||||||||||| |||||||||||    
T  14801960 cacaagttcgtctaagcaaaatgaagaagatgcataattttctgataaaactgggatgaaaatcctggactcttcaat 14801883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 234 - 562
Target Start/End: Original strand, 4528 - 4856
Alignment:
Q  234 aatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctatatgatc 333  Q
    |||||| ||| || |||||||||| ||| || |||||   ||||||||  |||||| |||||||| ||| ||| | |||||| ||| ||| |  ||| ||    
T  4528 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctc 4627  T
Q  334 atccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcag 433  Q
    | ||| ||||| ||||||||| || ||  |||||||||||| || |||||||||  |  |||| |  |||||||| ||||| |  |||  |||| |||||    
T  4628 agccaatgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcag 4727  T
Q  434 tgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaa 533  Q
    ||||| ||||| |||||||| ||||| ||||| |||||| |||| ||   | |||| || || ||||| ||||||||||| || |||||||| ||||| |    
T  4728 tgaattatgtggacaagttcgtccaaacaaaacgaagaaaaggcatagaagatagaaaacacaggaataaaaatcctagattcatcaatggccttgcgga 4827  T
Q  534 gtgacggtgttatttcgtcacctccttga 562  Q
    | || ||||| ||||| || |||| ||||    
T  4828 gggatggtgtgatttcatctcctctttga 4856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 562
Target Start/End: Original strand, 13617 - 13817
Alignment:
Q  362 tgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatgatgtgcacaagttcatccaagc 461  Q
    ||||||||||| | || ||| |||||| || |||| |  |||||||| ||||| |  |||  |||| |||| ||||| ||||| |||||||| |||||||    
T  13617 tgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagc 13716  T
Q  462 aaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttg 561  Q
    |||||   |||| |||||| ||| |||| || || ||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||    
T  13717 aaaattttgaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttg 13816  T
Q  562 a 562  Q
    |    
T  13817 a 13817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 424 - 562
Target Start/End: Original strand, 3468 - 3607
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgta-attgttagacaagacgggaatgaaaatcctagactcttcaat 522  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||| ||  ||| |||| || || ||||| ||||||||||| || |||||    
T  3468 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggttgatagaaaacacaggaataaaaatcctagattcatcaat 3567  T
Q  523 ggctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    ||| ||| | ||||| ||||| ||||| || |||| ||||    
T  3568 ggccttgaggagtgatggtgtgatttcatctcctctttga 3607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 562
Target Start/End: Original strand, 14319 - 14540
Alignment:
Q  340 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttgaagcagtgaatg 439  Q
    ||||| ||||||||| || || ||||||||||||| || |||||||||  |  |||| |  |||||||| ||||| |  |||  |||| ||||||||||     
T  14319 tgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaatt 14418  T
Q  440 atgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtgacg 539  Q
    ||||| |||||||| ||||| ||||| |||||| |||| || ||| |||| || || ||||| ||||||||||| || |||||||| ||| | ||||| |    
T  14419 atgtggacaagttcgtccaaacaaaacgaagaa-aggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatg 14517  T
Q  540 gtgttatttcgtcacctccttga 562  Q
    |||| ||||| || |||| ||||    
T  14518 gtgtgatttcatctcctctttga 14540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 558
Target Start/End: Complemental strand, 3279914 - 3279694
Alignment:
Q  341 gctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaatattggcaaaactaggcgcctattttccttg---aagcagtgaa 437  Q
    ||||| |||||||| ||  | |||||||||||||| |||||||||||||||||||| || || |||| |  ||| |  || || | |   ||||| ||||    
T  3279914 gctttgccataactcccagtctgatgtcgcacgtgggaaggttccacatcatagaaaataggtaaaattttgcgacccttctcttggtcgaagcaatgaa 3279815  T
Q  438 tgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatggctttgcgaagtga 537  Q
    ||||||| |||||||| ||||| ||||||  |||||| || || ||| |||| ||||| ||||| |||||| | |||||||| ||||| |||  ||||||    
T  3279814 tgatgtggacaagttcgtccaaacaaaatatagaagaagcatagttgatagagaagaccggaataaaaatcatggactcttcgatggccttgacaagtga 3279715  T
Q  538 cggtgttatttcgtcacctcc 558  Q
      |||| ||||| ||||||||    
T  3279714 ttgtgtgatttcatcacctcc 3279694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 384
Target Start/End: Original strand, 17993535 - 17993691
Alignment:
Q  228 gattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatgctatccttgttattttggaacttctctat 327  Q
    ||||||||||||||||||| |||||||||| |||  |||||||  |||||||||||  ||||  ||||||| | |||||| ||||||| ||   ||||      
T  17993535 gattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttc 17993634  T
Q  328 atgatcatccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttc 384  Q
    ||| | | | ||||||| |||||||||  | || ||||||||||| |||||||||||    
T  17993635 atgcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttc 17993691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 3280049 - 3279969
Alignment:
Q  218 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacatctccatg 298  Q
    |||||||||||||| ||||||||||| || |||||||| | |||  |||||||  |||||||||| |||||| ||| ||||    
T  3280049 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatg 3279969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 7665 - 7527
Alignment:
Q  424 cttgaagcagtgaatgatgtgcacaagttcatccaagcaaaatgaagaagaggcgtaattgttagacaagacgggaatgaaaatcctagactcttcaatg 523  Q
    |||| |||| ||||| ||||| |||||||| ||||||||||||   |||| |||||| ||| |||| || || ||||| ||||||||||| ||||| |||    
T  7665 cttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatg 7566  T
Q  524 gctttgcgaagtgacggtgttatttcgtcacctccttga 562  Q
    || ||| | ||||| ||||| ||||| || |||| ||||    
T  7565 gccttgaggagtgatggtgtgatttcatctcctctttga 7527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University