View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_61 (Length: 238)
Name: NF15324_low_61
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 917854 - 917650
Alignment:
| Q |
23 |
ttactattatttaaagtgataacaacatacaccaccaacacattatattttgccgttagagtttcacataatttgatgagatccatatgaattttaatca |
122 |
Q |
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| T |
917854 |
ttactattatttaaagtgataacaacatacaccacaaacaccttatattttgccgttagagtttcacataatttagtgagatccatatgaattttaatca |
917755 |
T |
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| Q |
123 |
atnnnnnnnnnnngtttttattttcccatgtgtccgagtatcaaacctaaatcttcaaggttgaagaacaaattttcaacaaaatgctttacttttctat |
222 |
Q |
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| T |
917754 |
at--aaaaaaaatgtttttatcttcccatatgtctgagtatcaaacctaaatcatcaagattgaagaacaaattttcaacaaaatgctttacttttctat |
917657 |
T |
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| Q |
223 |
ttcttct |
229 |
Q |
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||||||| |
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| T |
917656 |
ttcttct |
917650 |
T |
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