View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_63 (Length: 229)
Name: NF15324_low_63
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_63 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 49809264 - 49809073
Alignment:
| Q |
22 |
atccgagcctttgagtatggaattttgtagctcaagccattggaaatcattttatagttttgcttataaagtgaaaagatttcgaggtttagcgaggacg |
121 |
Q |
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| T |
49809264 |
atccgagcctttgagtatggaattttgtagctcaagccattggaaatcattttacagttttgcttataaagtgaaaagatttcgaggtttagcgaggatg |
49809165 |
T |
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| Q |
122 |
gcaattaaggttggccaagatgaccctagaagggtggtccattctttgaaagttggtctgggtttgacattgtacttttgttgtatctaaag |
213 |
Q |
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| T |
49809164 |
gcaattaaggttggccaagatgaccctagaagggtggtccattctttgaaagttggtctgggtttgacattgtacttttgttgtatctaaag |
49809073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 51850086 - 51850251
Alignment:
| Q |
50 |
agctcaagccattggaaatcattttatagttttgcttataaagtgaaaagatttcgaggtttagcgaggacggcaatt---aaggttggccaagatgacc |
146 |
Q |
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| T |
51850086 |
agctcaagccattggaaatcattttacagttttgtttataaagtgaaaagatttccaggttcaatgaggaagacaatttggaatgttggcaaagatgatc |
51850185 |
T |
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| Q |
147 |
ctagaagggtggtccattctttgaaagttggtctgggtttgaca-ttgtacttttgttgtatctaa |
211 |
Q |
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| T |
51850186 |
caagaagggtggtccattctttgaaagttggtcttgctttgacacttgtatctttgttgtatctaa |
51850251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 51860533 - 51860664
Alignment:
| Q |
50 |
agctcaagccattggaaatcattttatagttttgcttataaagtgaaaagatttcgaggtttagcgaggacggcaatt---aaggttggccaagatgacc |
146 |
Q |
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| T |
51860533 |
agctcaagctattggaaatcattttacagttttgctgataaagtgaaaagatttccaggtttagtgaaaaggacaatttggaaagttggcaaagatgatc |
51860632 |
T |
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| Q |
147 |
ctagaagggtggtccattctttgaaagttggt |
178 |
Q |
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| T |
51860633 |
caagaaaagtggttcattcattgaaagttggt |
51860664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 51820537 - 51820669
Alignment:
| Q |
51 |
gctcaagccattggaaatcattttatagttttgcttataaagtgaaaagatttcgaggtttagcgaggacggcaatt---aaggttggccaagatgaccc |
147 |
Q |
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| T |
51820537 |
gctcaagccattggaaattcatttacagtttagctgataaagtgaaaagatttccaggtttggtgaggagggaaatttggaaagttggcaaagatgatcc |
51820636 |
T |
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| Q |
148 |
tagaagggtggtccattctttgaaagttggtct |
180 |
Q |
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| T |
51820637 |
aagaaggatactccattctctgaaagttggtct |
51820669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 51379988 - 51379920
Alignment:
| Q |
50 |
agctcaagccattggaaatcattttatagttttgcttataaagtgaaaagatttcgaggtttagcgagga |
119 |
Q |
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| T |
51379988 |
agctcaagccattggaaatccaattacagtattgcttgtaaagtg-aaagatttccaggtttagcgagga |
51379920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 4492 - 4623
Alignment:
| Q |
50 |
agctcaagccattggaaatcattttatagttttgcttataaagtgaaaagatttcgaggtttagcgaggacggcaatt---aaggttggccaagatgacc |
146 |
Q |
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| T |
4492 |
agctcaagctattggaaatcattttacagttttgctgataaagtgaaaagatttccaggtttagtgaaaaggacaatttggaaagttggcaaagatgatc |
4591 |
T |
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| Q |
147 |
ctagaagggtggtccattctttgaaagttggt |
178 |
Q |
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| T |
4592 |
caagaaaagtggttcattcattgaaagttggt |
4623 |
T |
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