View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_64 (Length: 227)

Name: NF15324_low_64
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_64
NF15324_low_64
[»] chr5 (18 HSPs)
chr5 (6-211)||(30520566-30520771)
chr5 (6-211)||(30560906-30561111)
chr5 (11-211)||(30207487-30207687)
chr5 (6-208)||(29873134-29873336)
chr5 (6-211)||(30061332-30061537)
chr5 (6-211)||(30337466-30337671)
chr5 (6-211)||(30750606-30750811)
chr5 (14-211)||(29854279-29854476)
chr5 (6-182)||(30712398-30712574)
chr5 (6-183)||(30484361-30484538)
chr5 (11-211)||(30476340-30476540)
chr5 (6-185)||(17417560-17417739)
chr5 (55-185)||(30401083-30401213)
chr5 (76-209)||(30241324-30241457)
chr5 (6-211)||(30676229-30676434)
chr5 (68-174)||(17983920-17984026)
chr5 (6-183)||(30436773-30436950)
chr5 (79-177)||(30330184-30330282)
[»] chr1 (2 HSPs)
chr1 (11-185)||(7100386-7100560)
chr1 (11-185)||(7580686-7580860)
[»] chr4 (2 HSPs)
chr4 (6-183)||(20295551-20295728)
chr4 (6-185)||(52352919-52353098)
[»] chr3 (1 HSPs)
chr3 (6-207)||(25292892-25293093)
[»] chr7 (1 HSPs)
chr7 (6-183)||(26708292-26708469)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 30520771 - 30520566
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30520771 cagaaacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 30520672  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||    
T  30520671 aacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggt 30520572  T
Q  206 tcagca 211  Q
    ||||||    
T  30520571 tcagca 30520566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 30561111 - 30560906
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30561111 cagaaacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 30561012  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||    
T  30561011 aacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggt 30560912  T
Q  206 tcagca 211  Q
    ||||||    
T  30560911 tcagca 30560906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 30207487 - 30207687
Alignment:
Q  11 acacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaa 110  Q
    ||||||||||| |||||||||| |||||||  ||||||||    |||||| || || |||||| ||||||||||||| |||| ||||||||| |||||||    
T  30207487 acacaaacccatatttttgtattaaaattgctactcaccctagcatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaacaa 30207586  T
Q  111 ttggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggttcagc 210  Q
    | ||||||| |||||||| |||  || || | ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||    
T  30207587 tgggatagacggaaaggaagtcggagtccctcgcttgggtgagaagaaactcgataatcttctctttatcatcttctcgcccaaatacttttggttcagc 30207686  T
Q  211 a 211  Q
    |    
T  30207687 a 30207687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 29873134 - 29873336
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||| ||| | ||||||||| |||||||||    |||||| || || |||||| | ||||||||||| |||||||||||||| ||    
T  29873134 cagaaacacaaacccaaatatttttgtcaaaattgccactcaccctaacatcattgtagaccaattgaacgagagttgtttttccaataccacctaaacc 29873233  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    |||||| ||||||| |||||||| |||| || || | |||||||||||||||||||| | |||||| ||||||||||||| ||| ||| ||||||| |||    
T  29873234 aacaatgggatagacggaaaggaagtcagagtccctcgcttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggt 29873333  T
Q  206 tca 208  Q
    |||    
T  29873334 tca 29873336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 30061332 - 30061537
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| | ||||||||| |||||||||    |||||| || || |||||| ||||||||||||| |||| ||||||||| ||    
T  30061332 cagaaacacaaacccaaatttttttttcaaaattgccactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaacc 30061431  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    ||| || ||||||| |||||||| |||| || || |||||||||||||||||||||| | |||||| ||||||||| ||| ||| ||| | ||||| |||    
T  30061432 aactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggt 30061531  T
Q  206 tcagca 211  Q
    ||||||    
T  30061532 tcagca 30061537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 30337671 - 30337466
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| | ||||||||| |||||||||    |||||| || || |||||| ||||||||||||| |||| ||||||||| ||    
T  30337671 cagaaacacaaacccaaatttttttttcaaaattgccactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaacc 30337572  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    ||| || ||||||| |||||||| |||| || |||| |||||||||||||||||||| | |||||| ||||||||| ||| ||| ||| | ||||| |||    
T  30337571 aactatgggatagacggaaaggaagtcagagtccttcgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggt 30337472  T
Q  206 tcagca 211  Q
    ||||||    
T  30337471 tcagca 30337466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 30750606 - 30750811
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| | |||||||||||||||||||    |||||| || || |||||| ||||||||||||| |||| ||||||||| ||    
T  30750606 cagaaacacaaacccaaatttttttttcaaaattgtcactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaacc 30750705  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    ||| || ||||||| |||||||| |||| || || ||||||||||||||||||||||   |||||| ||||||||| ||| ||| ||| | ||||| |||    
T  30750706 aactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggt 30750805  T
Q  206 tcagca 211  Q
    ||||||    
T  30750806 tcagca 30750811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 29854279 - 29854476
Alignment:
Q  14 caaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaattg 113  Q
    ||||||||||||||| ||||||||||| |||||||||    |||||| || || ||||||  |||||||||||| |||| ||||||||| |||| ||| |    
T  29854279 caaacccaaatttttttatcaaaattgccactcaccctaacatcattgtagaccaattgaagaagagttgtttttccaacaccacctaaaccaaaaatgg 29854378  T
Q  114 gatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggttcagca 211  Q
    |||||| |||||||| |||  || || | | |||||||||||||||||| | |||||| ||||||||||||| ||| ||| | ||||| |||||||||    
T  29854379 gatagacggaaaggaagtctgagtccctcgtttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttcagca 29854476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 30712574 - 30712398
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| ||||||||||||| |||| |||||||||||  ||||||||    |||||| || |  |||||| ||||||||||||| |||||||||||||| ||    
T  30712574 cagaaacacaaacccaaaattttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaacc 30712475  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcat 182  Q
    |||||| |||||||  |||| || |||| || |||| || ||||||||||||||||||| |||||| ||||||||||    
T  30712474 aacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcat 30712398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 30484361 - 30484538
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| |||||||||||  ||||||||    |||||| || |  |||||| ||||||||||||| |||||||||||||| ||    
T  30484361 cagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaacc 30484460  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatc 183  Q
    |||||| |||||||  |||| || || | || |||| || | ||||||||||||||||| |||||| |||||||||||    
T  30484461 aacaatgggatagacagaaatgaagttagagtccttcgcataggtgagaagaaactcgacaatcttttctttatcatc 30484538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 30476340 - 30476540
Alignment:
Q  11 acacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaa 110  Q
    ||||||| ||||| |||||||| |||||||  ||| ||||  |||||||| || || | ||||||||| |||||||| |||| |||||||| ||||||||    
T  30476340 acacaaatccaaacttttgtattaaaattgctacttaccctatgatcattgtagaccatttgagcaagtgttgttttaccaacaccacctaggccaacaa 30476439  T
Q  111 ttggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggttcagc 210  Q
    | ||||||||||| |||| |||| |  | |  |||||||||||||||||||||| |||| ||||| ||||||||  ||| ||| | ||||| ||||||||    
T  30476440 taggatagatggataggaagtcagatacttgcgcttgggtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacactttgggttcagc 30476539  T
Q  211 a 211  Q
    |    
T  30476540 a 30476540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 17417739 - 17417560
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| ||||||| |||||||||||||| |||||||  ||||||||    |||||| || || |||||||| ||||||||||| |||||||||||||| ||    
T  17417739 cagaaacacaaatccaaatttttgtattaaaattgctactcaccctaacatcattgtagaccaattgagctagagttgttttaccaataccacctaaccc 17417640  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatctt 185  Q
    ||| || |||||||  |||||||  ||| |  || ||||||||||||| |||||||| | |||||||| | |||||||||    
T  17417639 aactatgggatagactgaaaggatttcacaatcccttgcttgggtgagcagaaactcaacaatcttctttgtatcatctt 17417560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 30401083 - 30401213
Alignment:
Q  55 atcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcaaagccctttgcttgggtgaga 154  Q
    |||||| || || |||||| ||||||||||||| |||||||||||||| |||||||| || |||| |||||||| |||| || || | || |||||||||    
T  30401083 atcattgtagaccaattgaacaagagttgttttaccaataccacctaaaccaacaatggggtagacggaaaggaagtcagagtccctcgcatgggtgaga 30401182  T
Q  155 agaaactcgataatcttctctttatcatctt 185  Q
    |||||||| | |||||| |||||||||||||    
T  30401183 agaaactcaaaaatcttttctttatcatctt 30401213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 30241457 - 30241324
Alignment:
Q  76 aagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctct 175  Q
    |||||| ||||| |||| ||||||||| |||| ||  |||||||||||||||| |||  || |||||||||||||||||||||||| ||||||||||| |    
T  30241457 aagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaactggataatcttcttt 30241358  T
Q  176 ttatcatcttgtcgaccatatactttaggttcag 209  Q
    ||||| |||| ||| ||| | ||||| |||||||    
T  30241357 ttatcgtcttctcgtccaaacacttttggttcag 30241324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 30676434 - 30676229
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| ||||||||||||| |||| ||||||||| | |||||||||    ||||||  | |  |||||| ||||||||||||| |||||||||||||| ||    
T  30676434 cagaaacacaaacccaaacttttttatcaaaatggccactcaccctaacatcattgaagatcaattgaacaagagttgtttttccaataccacctaaacc 30676335  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    || ||| |||||||  |||| || |||| || |||| || ||||||||||||||||||| |||||| |||| |||| ||| ||| ||| | ||||| | |    
T  30676334 aaaaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttgat 30676235  T
Q  206 tcagca 211  Q
    ||||||    
T  30676234 tcagca 30676229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 17983920 - 17984026
Alignment:
Q  68 aattgagcaagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataa 167  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| ||||||| |||||||| |||| ||  | | |||||||||||||||||||| | ||    
T  17983920 aattgagcaagagttgtttttccaacaccacctaacccaacaatgggatagacggaaaggaagtcagagaacctcgcttgggtgagaagaaactcaacaa 17984019  T
Q  168 tcttctc 174  Q
    |||||||    
T  17984020 tcttctc 17984026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 30436773 - 30436950
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| |||||||||||  ||||||||    |||||| || |  |||||| ||||||||||||| |||||||||||||| ||    
T  30436773 cagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaacc 30436872  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatc 183  Q
    |||||  |||||||  ||||  | |||| || |||| ||  |||| |||||||||| || |||||| |||||||||||    
T  30436873 aacaacgggatagacagaaataaagtcagagtccttcgcaagggtaagaagaaactggacaatcttttctttatcatc 30436950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 30330282 - 30330184
Alignment:
Q  79 agttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctcttt 177  Q
    ||||||||| |||||||| ||||| ||||| || |||||||||||||||| ||||  | || | ||||||||||||||||||| || |||||| |||||    
T  30330282 agttgtttttccaatacctcctaaaccaactatgggatagatggaaaggaagtcagtgtccctcgcttgggtgagaagaaacttgacaatcttatcttt 30330184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 7100386 - 7100560
Alignment:
Q  11 acacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaa 110  Q
    |||||||||||||||||||| |  ||||||||||||||||  | |||||| ||||| ||||||| |||||||||||| |||| ||||||||| || ||||    
T  7100386 acacaaacccaaatttttgttttgaaattgtcactcaccctatcatcattgtaaaccaattgagaaagagttgtttttccaacaccacctaaaccgacaa 7100485  T
Q  111 ttggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatctt 185  Q
    | ||||||| ||| |||| |||| || ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  7100486 tgggatagacggataggaagtcagagtcctttgcttgggtgagaagaaactcaacaatcttctctttatcatctt 7100560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 7580860 - 7580686
Alignment:
Q  11 acacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaa 110  Q
    |||||||||||||||||||| |  ||||||| ||||||||  | ||| || || || |||||||||||||||||||| |||| ||||||||| |||||||    
T  7580860 acacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaa 7580761  T
Q  111 ttggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatctt 185  Q
    ||||||||| |||||||| |||  || || | |||||||||||||||||||| | |||| |||||||||||||||    
T  7580760 ttggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatctt 7580686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 20295728 - 20295551
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| ||||||||||||||| || ||||||||||| ||||||| || | |||||| || ||||||||| ||||||||||||| |||||||||||||| ||    
T  20295728 cagaaacacaaacccaaattcttttatcaaaattgccactcacgcgatcatcattgtagactaattgaacaagagttgtttttccaataccacctaaacc 20295629  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatc 183  Q
    |||||| |||||||  |||| || |||| || |||| || ||||||||||||||||||| |||||| | |||||||||    
T  20295628 aacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttttttatcatc 20295551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 52352919 - 52353098
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| ||| ||| || | |||||| |    |||||| || || |||||| ||||||||||||| |||| ||||||||| ||    
T  52352919 cagaaacacaaacccaaatttttctatgaaattttttactcactctaacatcattgtagaccaattgaacaagagttgttttaccaacaccacctaaacc 52353018  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatctt 185  Q
    |||||| ||||| |    ||||| ||||||     | |||||||||||||||||||||  ||||||||||||||| ||||    
T  52353019 aacaataggatacacaacaaggaagtcaaacttactcgcttgggtgagaagaaactcggcaatcttctctttatcttctt 52353098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 25293093 - 25292892
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||||||| |||| ||  ||||||||    |||||| || || |||||| ||||||||||||| |||| ||||||||| ||    
T  25293093 cagaaacacaaacccaaatttttgtattaaaagtgctactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaacc 25292994  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatcttgtcgaccatatactttaggt 205  Q
    |||||| |||| || |||||||| |||| || || |||||||||| ||||||||||||| | |||||||||||||||||| ||| ||| ||||||| |||    
T  25292993 aacaatgggatggacggaaaggaagtcagagtcccttgcttgggtaagaagaaactcgacagtcttctctttatcatcttctcgtccaaatacttttggt 25292894  T
Q  206 tc 207  Q
    ||    
T  25292893 tc 25292892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 26708292 - 26708469
Alignment:
Q  6 cagagacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagcc 105  Q
    |||| |||||||||||||||||| |||||||||||||||||||||    ||| || || |  || ||| ||||||||||||| |||||||||||||||||    
T  26708292 cagaaacacaaacccaaatttttttatcaaaattgtcactcaccctaacatcgttgtagatcaactgaacaagagttgtttttccaataccacctaagcc 26708391  T
Q  106 aacaattggatagatggaaaggaggtcaaagccctttgcttgggtgagaagaaactcgataatcttctctttatcatc 183  Q
    |||||| |||||||  |||| || |||| || |||| || ||||||||||||||||||| |||||| |||||||||||    
T  26708392 aacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcatc 26708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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