View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_66 (Length: 221)
Name: NF15324_low_66
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 38287493 - 38287301
Alignment:
| Q |
14 |
atgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtga |
113 |
Q |
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| T |
38287493 |
atgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtga |
38287394 |
T |
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| Q |
114 |
tatcatacgcacagac--nnnnnnnnnggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaattatagac |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38287393 |
tatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaatcatagac |
38287301 |
T |
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