View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_72 (Length: 203)
Name: NF15324_low_72
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 30629552 - 30629733
Alignment:
| Q |
18 |
ttttgtgttgtaaattaaacattttaattttatgctatggttataatgtagattagggaccaatttgtgattggtttgagacttgagtggtaaggaactc |
117 |
Q |
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| T |
30629552 |
ttttgtgttgtatattaaacattttaattttatgatatggttataatgtagattagggaccaacttgtgattggtttgagatttgagtggtaaggaactc |
30629651 |
T |
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| Q |
118 |
gagtactttaaacaagtggtcagaagtttgatttgtgactcttgtatttgaagaaaatctagttggaagagaataatttacc |
199 |
Q |
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| T |
30629652 |
gagtactttaaacaagtggtcagaagtttgatttacgactcttgtatttgaagaaaatctaattggaagagaagaatttacc |
30629733 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 34329597 - 34329631
Alignment:
| Q |
122 |
actttaaacaagtggtcagaagtttgatttgtgac |
156 |
Q |
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| T |
34329597 |
actttaaacaagtggtcagatgtttgatttgtgac |
34329631 |
T |
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