View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_8 (Length: 534)

Name: NF15324_low_8
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_8
NF15324_low_8
[»] chr5 (3 HSPs)
chr5 (1-521)||(19988669-19989189)
chr5 (35-269)||(22002545-22002779)
chr5 (6-330)||(22699631-22699952)
[»] chr2 (3 HSPs)
chr2 (102-330)||(33239013-33239241)
chr2 (102-330)||(33246934-33247162)
chr2 (8-59)||(11620551-11620602)
[»] chr1 (9 HSPs)
chr1 (68-253)||(33478048-33478235)
chr1 (68-253)||(34507188-34507375)
chr1 (35-319)||(33467961-33468245)
chr1 (177-241)||(47829977-47830041)
chr1 (85-167)||(47825387-47825470)
chr1 (8-103)||(48005671-48005766)
chr1 (8-56)||(2541108-2541156)
chr1 (177-220)||(2541324-2541367)
chr1 (184-220)||(47825281-47825317)
[»] chr3 (3 HSPs)
chr3 (1-304)||(30536033-30536333)
chr3 (35-224)||(30539414-30539603)
chr3 (177-220)||(20960581-20960624)
[»] chr8 (1 HSPs)
chr8 (177-219)||(16775876-16775918)


Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 19988669 - 19989189
Alignment:
Q  1 ccattggttcttttgatccgagcccctagaaccgccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtca 100  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19988669 ccatgggttcttttgatccgagcccttagaaccaccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtca 19988768  T
Q  101 attaaagcaaacagacttaactagtttcatgtatgtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatctta 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  19988769 attaaagcacacagacttaactagtttcatgtatgtgacctggttaagactgaatcatagtggtgctattgtatgcattatttgaataaagagcatctta 19988868  T
Q  201 tttatttatatttccatatctctcttaaaatttcattaatcattttaatttcaacgaaccaatgtcattcatgtgttattttttaatcatctagttgaaa 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  19988869 tttatttatgtttccatatctctcttaaaatttcattaatcattctaatttcaatgaatcaatgtcattcatgtgttattttttaatcatctagttgaaa 19988968  T
Q  301 gttttcaaattacaatcaaatgaaaacaaaagtggacgagagaatagcgatgaagacttgtactaaaattaattaaatctattagagcatttacattttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  19988969 gttttcaaattacaatcaaatgaaaacaaaagtggacgagagaataacgatgaagacttgtgctaaaattaattaaatctattagacaatttacattttg 19989068  T
Q  401 tattttttattctatcgtttaaataagtaagacactaaatatgtatacctccaccatccattttgttgtgggaatctaaccacttccggtaaactcatcc 500  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  19989069 tattttttattctatcatttagataagcaagacactaaatatgtatacctccaccatccattttgttgtgggaatctaactacttccagtagactcatcc 19989168  T
Q  501 cctattggtattatatatttt 521  Q
    |||||||||||||||||||||    
T  19989169 cctattggtattatatatttt 19989189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 22002545 - 22002779
Alignment:
Q  35 ccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtcaattaaagcaaacagacttaactagtttcatgtat 134  Q
    |||||||||||||   |||||||||  ||| | ||| |||||||||  | |||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  22002545 ccttaagatgctcccattaatttatttttatattttcatgtttcatgttgttttaaattaatttcaattaaagcacacagacttaactagttacatgtat 22002644  T
Q  135 gtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatcttatttatttatatttccatatctctcttaaaatttc 234  Q
    ||||||  |||||||||||||||||||||| || |  ||| |||||||||||||| ||||||||| || |||||| ||||||||||||||  ||| ||||    
T  22002645 gtgaccatgttaagactgaatcatagtggtgttgtattatgcattatttgaataaggagcatcttgttcatttatttttccatatctctccaaaattttc 22002744  T
Q  235 attaatcattttaatttcaacgaaccaatgtcatt 269  Q
    ||||||| ||||| ||| || ||| |||| |||||    
T  22002745 attaatcgttttattttaaatgaatcaatttcatt 22002779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 22699952 - 22699631
Alignment:
Q  6 ggttcttttgatccgagcccctagaaccgccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtcaattaa 105  Q
    ||||||||||||  ||||||||| | || ||||||||||||  | |||||| ||  ||| |||||||||||||||| | |||||| ||||| ||| ||||    
T  22699952 ggttcttttgatatgagcccctaaatccaccttaagatgcttctattaatt-atttttataattttatgtttcataatgttttaacttaat-tca-ttaa 22699856  T
Q  106 agcaaacagacttaactagtttcatgtatgtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatcttatttat 205  Q
    |||| |||||||||||||||||||| ||||||| ||||||| || ||||||||| |||| || |  ||| |||||||| |||||||||||| |||||| |    
T  22699855 agcacacagacttaactagtttcatatatgtgatctggttaggattgaatcatattggtgttgtattatgcattatttaaataaagagcattttatttct 22699756  T
Q  206 ttatatttccatatctctcttaaaat-ttcattaatcattttaatttcaacgaaccaatgtcattcatgtgttattttttaatcatctagttgaaagttt 304  Q
    |||||||| ||||| ||||| ||||| ||||||||||  ||||||||||| ||| |  | |||||  |  ||| ||||| || |||||||||   |||||    
T  22699755 ttatattttcatatatctctaaaaatcttcattaatc-ctttaatttcaatgaatctgtttcattacttggttgtttttcaaccatctagttagcagttt 22699657  T
Q  305 tcaaattacaatcaaatgaaaacaaa 330  Q
    | |||||||||| ||||| |||||||    
T  22699656 taaaattacaataaaatgtaaacaaa 22699631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 102 - 330
Target Start/End: Original strand, 33239013 - 33239241
Alignment:
Q  102 ttaaagcaaacagacttaactagtttcatgtatgtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatcttat 201  Q
    |||||||| |||||||| |||||||||||||||||||  |||||| ||||||||||||||  |||| |  ||| ||||||| ||||||||||| ||||||    
T  33239013 ttaaagcacacagacttgactagtttcatgtatgtgatttggttaggactgaatcatagtaatattgtattatgcattattggaataaagagcgtcttat 33239112  T
Q  202 ttatttatatttccatatctctcttaaaatttcattaatcattttaatttcaacgaaccaatgtcattcatgtgttattttttaatcatctagttgaaag 301  Q
    ||||||| |||| ||||||||||  |||  |||||||||| |||||||||||| |||||||  |||||  | |||| ||||| ||||||||||||  |      
T  33239113 ttatttaaattttcatatctctccaaaatgttcattaatcgttttaatttcaatgaaccaacttcattagtttgttgtttttcaatcatctagttcgact 33239212  T
Q  302 ttttcaaattacaatcaaatgaaaacaaa 330  Q
    |||| ||||| |||| ||||| |||||||    
T  33239213 ttttaaaattgcaataaaatgcaaacaaa 33239241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 102 - 330
Target Start/End: Original strand, 33246934 - 33247162
Alignment:
Q  102 ttaaagcaaacagacttaactagtttcatgtatgtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatcttat 201  Q
    |||||||| |||||||| |||||||||||||||||||  |||||| ||||||||||||||  |||| |  ||| ||||||| ||||||||||| ||||||    
T  33246934 ttaaagcacacagacttgactagtttcatgtatgtgatttggttaggactgaatcatagtaatattgtattatgcattattggaataaagagcgtcttat 33247033  T
Q  202 ttatttatatttccatatctctcttaaaatttcattaatcattttaatttcaacgaaccaatgtcattcatgtgttattttttaatcatctagttgaaag 301  Q
    ||||||| |||| ||||||||||  |||  |||||||||| |||||||||||| |||||||  |||||  | |||| ||||| ||||||||||||  |      
T  33247034 ttatttaaattttcatatctctccaaaatgttcattaatcgttttaatttcaatgaaccaacttcattagtttgttgtttttcaatcatctagttcgact 33247133  T
Q  302 ttttcaaattacaatcaaatgaaaacaaa 330  Q
    |||| ||||| |||| ||||| |||||||    
T  33247134 ttttaaaattgcaataaaatgcaaacaaa 33247162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 11620551 - 11620602
Alignment:
Q  8 ttcttttgatccgagcccctagaaccgccttaagatgctcatgttaatttat 59  Q
    ||||||||||| |||||| |||| |||||||||||||||| ||| |||||||    
T  11620551 ttcttttgatcggagcccttagatccgccttaagatgctcgtgtcaatttat 11620602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 33478048 - 33478235
Alignment:
Q  68 ttttatgtttcatactattttaaattaatgtcaattaaagcaaacagacttaactagtttcat--gtatgtgacctggttaagactgaatcatagtggta 165  Q
    |||||||||||||  |||||||| ||||| | ||||||| || |||| |||||||||||||||  |||||| || |||||| |||||||||||| | ||     
T  33478048 ttttatgtttcattttattttaagttaatttaaattaaaacacacaggcttaactagtttcatatgtatgtaacttggttaggactgaatcataatcgtg 33478147  T
Q  166 ttattgtatacattatttgaataaagagcatcttatttatttatatttccatatctctcttaaaatttcattaatcattttaatttca 253  Q
    || |  |||  |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  33478148 ttgtattatctattatttgaataaagagcgtcttatttatttatatatccatatctctcttaaattttcattaatcattttaagttca 33478235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 34507188 - 34507375
Alignment:
Q  68 ttttatgtttcatactattttaaattaatgtcaattaaagcaaacagacttaactagtttcat--gtatgtgacctggttaagactgaatcatagtggta 165  Q
    |||||||||||||  |||||||| ||||| |||||||||||| |||  |||||||||||||||  |||||| || |||||| |||||||||||| ||||     
T  34507188 ttttatgtttcatgttattttaagttaatttcaattaaagcacacatgcttaactagtttcatatgtatgtaacttggttaggactgaatcataatggtg 34507287  T
Q  166 ttattgtatacattatttgaataaagagcatcttatttatttatatttccatatctctcttaaaatttcattaatcattttaatttca 253  Q
    || |  |||   |||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||    
T  34507288 ttgtattatctgttatttcaataaagagcgtcttatttatttatatatccatatctctcttaaattttcattaatcgttttaagttca 34507375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 33467961 - 33468245
Alignment:
Q  35 ccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtcaattaaagcaaacagacttaactagtttc--atgt 132  Q
    ||||||||||||| | |||||||||  || | ||||| | ||| ||  |||||||| ||||| |||||||||||| | || ||| |||||||||  ||||    
T  33467961 ccttaagatgctcttattaatttat--ttcatattttttatttgatgttattttaagttaatttcaattaaagcacaaaggcttgactagtttcgtatgt 33468058  T
Q  133 atgtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatcttatttatttatatttccatatctctcttaaaatt 232  Q
    ||||  | |||||| ||||| |  ||| || | || |  |||  ||| || |||||||||||||||||||||||| ||| | ||||||||||||||| ||    
T  33468059 atgtagcttggttaggactgcaaaataatgatgttgtattatctattcttcgaataaagagcatcttatttatttttatattcatatctctcttaaattt 33468158  T
Q  233 tcattaatcattttaatttcaacgaaccaatgtcattcatgtgttattttttaatcatctagttgaaagttttcaaattacaatcaa 319  Q
    ||||||||  |||||| ||||| ||| | || ||||||||  ||  ||||| | ||||||| ||||| ||||| ||||||| |||||    
T  33468159 tcattaattgttttaaattcaatgaatctatttcattcattcgtcgtttttcagtcatctaattgaatgttttaaaattacgatcaa 33468245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 47830041 - 47829977
Alignment:
Q  177 attatttgaataaagagcatcttatttatttatatttccatatctctcttaaaatttcattaatc 241  Q
    ||||||||||||||| ||||||||||||  |||||||||||||| || | ||| |||||||||||    
T  47830041 attatttgaataaagggcatcttatttagctatatttccatatcgctttaaaattttcattaatc 47829977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 47825470 - 47825387
Alignment:
Q  85 ttttaaattaatgtcaattaaagcaaacagacttaac-tagtttcatgtatgtgacctggttaagactgaatcatagtggtatt 167  Q
    |||||||||||| |||||| ||||| |||  |||||| |||||||||||||||||| |||||| |||| |||| ||||| ||||    
T  47825470 ttttaaattaatttcaattgaagcacacatgcttaacctagtttcatgtatgtgacttggttaggactaaatcttagtgttatt 47825387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 48005671 - 48005766
Alignment:
Q  8 ttcttttgatccgagcccctagaaccgccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtcaatt 103  Q
    |||||||||||||||||| ||||   |||||||||||| | |||||||||||  |||   |||||||||||||  | |||||||||||| ||||||    
T  48005671 ttcttttgatccgagcccttagatttgccttaagatgcccgtgttaatttatttttattgttttatgtttcatgttgttttaaattaatttcaatt 48005766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2541108 - 2541156
Alignment:
Q  8 ttcttttgatccgagcccctagaaccgccttaagatgctcatgttaatt 56  Q
    |||||||||||||||||| |||| || ||||||||||||| ||||||||    
T  2541108 ttcttttgatccgagcccttagatccaccttaagatgctcgtgttaatt 2541156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 2541324 - 2541367
Alignment:
Q  177 attatttgaataaagagcatcttatttatttatatttccatatc 220  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||    
T  2541324 attatttgaataaagggcatcttatttatctatattttcatatc 2541367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 47825317 - 47825281
Alignment:
Q  184 gaataaagagcatcttatttatttatatttccatatc 220  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  47825317 gaataaagggcatcttatttatctatatttccatatc 47825281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 30536333 - 30536033
Alignment:
Q  1 ccattggttcttttgatccgagcccctagaaccgccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtca 100  Q
    |||| |||||||||||||||||||| |||| || ||||| ||||||| | |||||||||  ||| | ||||| |||  ||  | |||||||||||| | |    
T  30536333 ccatgggttcttttgatccgagcccttagatccaccttacgatgctcctattaatttatt-ttatatttttaggttcaatgatgttttaaattaatttta 30536235  T
Q  101 attaaagcaaacagacttaactagtttcatgtatgtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatctta 200  Q
    ||||||  | ||| || ||| | ||||| ||| |||||||| |||| |||||||||||| || | || |  |||  ||||||| ||||||||||||||||    
T  30536234 attaaaagagacaaacctaattggtttcctgtttgtgacctagttaggactgaatcataatgttgttgtgttatgtattatttaaataaagagcatctta 30536135  T
Q  201 tttatttatatttccatatctctcttaaaatttcattaatcattttaatttcaacgaaccaatgtcattcatgtgttattttttaatcatctagttgaaa 300  Q
    ||||||||||||||||||  ||||  ||| |||||| ||||||||||||||| | ||| |||| |||| | |  ||| ||||| ||||||||||||||||    
T  30536134 tttatttatatttccata--tctccaaaattttcatcaatcattttaatttccatgaatcaatttcataccttcgttgtttttcaatcatctagttgaaa 30536037  T
Q  301 gttt 304  Q
    ||||    
T  30536036 gttt 30536033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 35 - 224
Target Start/End: Original strand, 30539414 - 30539603
Alignment:
Q  35 ccttaagatgctcatgttaatttatgcttaaaattttatgtttcatactattttaaattaatgtcaattaaagcaaacagacttaactagtttcatgtat 134  Q
    ||||||||||||| | |||||||||  ||| | |||||||||||||  | |||||||||||| |||||||||||| ||| |||||||| |||| ||||      
T  30539414 ccttaagatgctcctattaatttatttttatatttttatgtttcatgatgttttaaattaatttcaattaaagcacacatacttaactggttttatgttc 30539513  T
Q  135 gtgacctggttaagactgaatcatagtggtattattgtatacattatttgaataaagagcatcttatttatttatatttccatatctctc 224  Q
     |||||| |||| ||| || || ||||||| || |  |||  |||||| ||||||||||||||||||||||||||||||||  |||||||    
T  30539514 atgacctagttaggaccgattcgtagtggtgttgtattatgtattattggaataaagagcatcttatttatttatatttcctaatctctc 30539603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 20960581 - 20960624
Alignment:
Q  177 attatttgaataaagagcatcttatttatttatatttccatatc 220  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||    
T  20960581 attatttaaataaagggcatcttatttatttatatttccatatc 20960624  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 16775918 - 16775876
Alignment:
Q  177 attatttgaataaagagcatcttatttatttatatttccatat 219  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||    
T  16775918 attatttgaataaagggcatcttatttatctatattttcatat 16775876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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