View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_9 (Length: 517)
Name: NF15324_low_9
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 141 - 517
Target Start/End: Complemental strand, 36543206 - 36542820
Alignment:
| Q |
141 |
tcattttaaggtaaactcattttagagaaatcaaattataaaatgtttaatgtacttgtttaagtttttaaagaaagaaaccaatatccaaaccaaagnn |
240 |
Q |
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| T |
36543206 |
tcattttaaggtaaactcattttagagaaatcaaattataaaatgtttaatgcacttgtttaagtttttaaagaaagaaaccaatatccaaaccaaagtt |
36543107 |
T |
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| Q |
241 |
nnnnnagaaaataaccacattctagnnnnnnnctt----------ccagtatcttgaatattgaaacgtaaacaaaaatttaaaccaattcagatgtgca |
330 |
Q |
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| T |
36543106 |
tttttagacaataaccacagtctagttttttttttttttttttttccagtatcttgaatattgaaacgtaaacaaaaatttaaaccaattcagatgtgca |
36543007 |
T |
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| Q |
331 |
gactaagttgcaatgttcatgactaaactctccaattacatgagaattcatgcagcaagtacttgtatagttgtattaatgcctgtattttatacatcta |
430 |
Q |
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| T |
36543006 |
gactaagttataatgttcatgactaaactctccaattacatgagaattcatgcagcaagtacttgtatagttgtattaatgcctgtattttatacatcta |
36542907 |
T |
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| Q |
431 |
gatctaggcatgatggttgcccctcattacctaaaaaattaacaaataacagaagatagcataaggagacatatcatcttgatttct |
517 |
Q |
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| T |
36542906 |
gatctaggcatgatggttgcctctcattacctaaaaaattaacaaataacagaagatagcataaggagacatatcatcttgatttct |
36542820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 36543292 - 36543212
Alignment:
| Q |
22 |
gaacttatggatcaaaacccaactaaatcctcacactc--atacaatgatcaacccaatgctttataatatcaagaaaaat |
100 |
Q |
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| T |
36543292 |
gaacttatggatcaaaacccaactaaatcctcacactctcatacaatgatcaacccaatgctttataatatcaagaaaaat |
36543212 |
T |
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