View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15325_low_2 (Length: 1030)

Name: NF15325_low_2
Description: NF15325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15325_low_2
NF15325_low_2
[»] chr1 (7 HSPs)
chr1 (638-965)||(9870827-9871149)
chr1 (103-402)||(9870352-9870660)
chr1 (640-914)||(9876367-9876642)
chr1 (470-582)||(9870658-9870770)
chr1 (17-108)||(9868943-9869032)
chr1 (76-193)||(38571516-38571635)
chr1 (59-140)||(28640004-28640085)
[»] chr5 (3 HSPs)
chr5 (72-193)||(20033665-20033788)
chr5 (80-140)||(12369838-12369898)
chr5 (89-140)||(33914905-33914956)
[»] chr4 (9 HSPs)
chr4 (59-193)||(50867351-50867487)
chr4 (143-193)||(29516136-29516186)
chr4 (81-141)||(19509156-19509216)
chr4 (75-139)||(52432974-52433038)
chr4 (80-134)||(2395133-2395187)
chr4 (61-139)||(17839410-17839488)
chr4 (85-140)||(20182817-20182872)
chr4 (73-139)||(9418610-9418676)
chr4 (143-188)||(26867428-26867473)
[»] chr7 (2 HSPs)
chr7 (92-193)||(7442702-7442805)
chr7 (99-139)||(42572886-42572926)
[»] chr8 (2 HSPs)
chr8 (76-134)||(43107181-43107239)
chr8 (100-139)||(2286995-2287034)
[»] chr2 (2 HSPs)
chr2 (57-139)||(34394771-34394853)
chr2 (72-139)||(1643649-1643716)
[»] scaffold0362 (1 HSPs)
scaffold0362 (80-193)||(6575-6690)
[»] scaffold0072 (1 HSPs)
scaffold0072 (82-193)||(13698-13811)
[»] scaffold0376 (1 HSPs)
scaffold0376 (59-127)||(7206-7274)
[»] chr3 (2 HSPs)
chr3 (80-122)||(30844289-30844331)
chr3 (79-136)||(6877135-6877192)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 638 - 965
Target Start/End: Original strand, 9870827 - 9871149
Alignment:
Q  638 tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9870827 tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact 9870926  T
Q  738 atattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaa 837  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9870927 atattcttttagacatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataattccaa 9871026  T
Q  838 ggtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaataattttcctttagaaaaaagag 937  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| ||       ||| | |||||||    
T  9871027 ggtcaaatttatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggtatagaaaaaaaaa-----aattaaagaaaagag 9871121  T
Q  938 ttcaagtctaagaagctttgacaagtga 965  Q
    ||||||||||||||||||||||||||||    
T  9871122 ttcaagtctaagaagctttgacaagtga 9871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 103 - 402
Target Start/End: Original strand, 9870352 - 9870660
Alignment:
Q  103 cattcttcaagattttcattcattcttcacttttcatcccctacaattttctttcttaaatttaattttgggaatgagttatgatatcatgagcaccact 202  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  9870352 cattcttcaatatttttattcattcttcatttttcatcccctacaattttctttcttaaatttaattttgggaatgggttatgatatcatgggcaccact 9870451  T
Q  203 catactatacccaaaattgttgtgtt-tttatgtggggatagtaaggtgatttgtagagagaggtttaggtggtttt--cagattgtataagctaaaaat 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  9870452 catactatacccaaaattgttgtgttgtttatgtggggatagtatggtggtttgtagagagaggtttaggtggttttcgcggattgtataagctaaaaat 9870551  T
Q  300 ccccaaaaagaagttc--atattatataatctagatttcataatatagaaagacaaatgagaagagagtagggtgg-aaaaaga---tactactatgacc 393  Q
    || |||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| ||||||| |||  |||| |||||||   |||||||||||||    
T  9870552 cctcaaaaagaagttcatatattatataatctggattttataatatagaaagacaaataagaagagtgtacagtggaaaaaagatactactactatgacc 9870651  T
Q  394 atataccca 402  Q
    |||||||||    
T  9870652 atataccca 9870660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 640 - 914
Target Start/End: Original strand, 9876367 - 9876642
Alignment:
Q  640 tatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaag-caaaatgattcctacta 738  Q
    |||||||||| ||| ||| ||||| ||||||  || || |||||||| ||| |||||||||||  ||||||||  ||||||| |||||||||||||||||    
T  9876367 tatgttcctaatgccagtacttacctatgacactatatcatcatgcgcataaaaatgtgaactccaaattacactaacaaaggcaaaatgattcctacta 9876466  T
Q  739 tattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaag 838  Q
    || ||||||||| ||||| |||||||| | ||||||||||| |||||| || ||||||||||||||||||||||||||  | ||||| ||||  ||||||    
T  9876467 taatcttttagacatgtccatttcaatatggacctacatggattttatctacttatataatgttttaaaaaacattatttggataaagaatacttccaag 9876566  T
Q  839 gtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaa 914  Q
    |||||||||||| |||| | || ||||||||||||||||  |||||| | |||||||||||||| |||||||||||    
T  9876567 gtcaaatatatacgtcaccttctatagtttaaagggaaacgttgatatatcacaagagttatcgacataccaaaaa 9876642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 470 - 582
Target Start/End: Original strand, 9870658 - 9870770
Alignment:
Q  470 ccatcacaaataatattaacatttattgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaa 569  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9870658 ccatcacaaatgatattaacatttaccgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaa 9870757  T
Q  570 tcagggtacatgc 582  Q
    |||||||||||||    
T  9870758 tcagggtacatgc 9870770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 9868943 - 9869032
Alignment:
Q  17 agttaatggattctggatcattttaaacgttttctgatcaattgtagttacattataggaatgttttatggttataaatagtcttgcattct 108  Q
    |||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9868943 agttaacggattctgaatcattttaaacgtttcct--tcaattgtagttacattataggaatgttttaaggttataaatagtcttgcattct 9869032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 38571516 - 38571635
Alignment:
Q  76 aatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatccc--ctacaattttctttcttaaatttaattttgg 173  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||  |||||||| ||   ||||  | |||||||||||||| |||||||    
T  38571516 aatgtttcatggttataaatagtcttgcatccttcaacattttcatttattctttgcttttcattccttttacatatctctttcttaaatttcattttgg 38571615  T
Q  174 gaatgagttatgatatcatg 193  Q
    || |||||||| ||| ||||    
T  38571616 gagtgagttataataccatg 38571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 28640004 - 28640085
Alignment:
Q  59 tgtagttacattataggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatc 140  Q
    |||||||| | | |||||||| |||| || ||||||||| ||||||| |||||| | ||||||| ||||||||||| |||||    
T  28640004 tgtagttatagtctaggaatgatttaaggctataaatagccttgcatgcttcaacaatttcatttattcttcacttctcatc 28640085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 20033665 - 20033788
Alignment:
Q  72 taggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatccc--ctacaattttctttcttaaatttaatt 169  Q
    |||||||||||||||| |||||||||| |||||  |||||| |||||  ||||||||||||||||||| ||  |||||| |||||||||||||||| |||    
T  20033665 taggaatgttttatggctataaatagttttgcacccttcaacatttttgttcattcttcacttttcattccttctacaaatttctttcttaaatttcatt 20033764  T
Q  170 ttgggaatgagttatgatatcatg 193  Q
    |||||| |  ||||||||| ||||    
T  20033765 ttgggagttggttatgataccatg 20033788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 12369898 - 12369838
Alignment:
Q  80 ttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatc 140  Q
    |||||| |||||||||| ||||| || |||||| |||| |||||||||||||||| |||||    
T  12369898 ttttatagttataaataatcttgtatccttcaacatttgcattcattcttcacttctcatc 12369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 33914956 - 33914905
Alignment:
Q  89 tataaatagtcttgcattcttcaagattttcattcattcttcacttttcatc 140  Q
    ||||||||| || | ||| ||||| |||||||||||||||||||||||||||    
T  33914956 tataaatagcctcgtatttttcaacattttcattcattcttcacttttcatc 33914905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 50867487 - 50867351
Alignment:
Q  59 tgtagttacattataggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatccc--ctacaattttcttt 156  Q
    |||||||||| | |||||  ||||||||| ||||||||| ||||||| ||||||  ||||||||||||||||||||||||| ||  ||||||||||||||    
T  50867487 tgtagttacaatctaggaccgttttatggctataaatagccttgcatccttcaacgttttcattcattcttcacttttcattccttctacaattttcttt 50867388  T
Q  157 cttaaatttaattttgggaatgagttatgatatcatg 193  Q
    |  |  ||| ||||| ||| |||||||||||| ||||    
T  50867387 caaattttttattttcggagtgagttatgataccatg 50867351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 29516136 - 29516186
Alignment:
Q  143 ctacaattttctttcttaaatttaattttgggaatgagttatgatatcatg 193  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  29516136 ctacaattttctttcttaaatttcattttgggagtgagttatgatatcatg 29516186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 19509216 - 19509156
Alignment:
Q  81 tttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatcc 141  Q
    ||||| ||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||    
T  19509216 tttatagttataaatagtcttgcatacttcaacaatttcattcattcttcacttgtcatcc 19509156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 52432974 - 52433038
Alignment:
Q  75 gaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    |||||||||||| |||||||||||| |||| ||||||| ||||||||||| |||| |||||||||    
T  52432974 gaatgttttatgattataaatagtcctgcactcttcaacattttcattcaatcttaacttttcat 52433038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 2395133 - 2395187
Alignment:
Q  80 ttttatggttataaatagtcttgcattcttcaagattttcattcattcttcactt 134  Q
    ||||||||| ||||||||||||| ||  ||||| |||||||||||||||||||||    
T  2395133 ttttatggtcataaatagtcttgaatcgttcaacattttcattcattcttcactt 2395187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 17839410 - 17839488
Alignment:
Q  61 tagttacattataggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    |||||||| | ||| ||||||||||   ||||||||||||||||  |||||| |||||||| || ||||||||||||||    
T  17839410 tagttacagtgtagaaatgttttataactataaatagtcttgcacccttcaacattttcatccaatcttcacttttcat 17839488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 20182872 - 20182817
Alignment:
Q  85 tggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatc 140  Q
    ||||||||||||| ||||||| |||||| |||||||| | |||||||||| |||||    
T  20182872 tggttataaatagccttgcatgcttcaacattttcatcccttcttcacttctcatc 20182817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 9418610 - 9418676
Alignment:
Q  73 aggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    ||||||||| | ||| ||||||||| ||||||||||| ||  |||||||||||| | ||||||||||    
T  9418610 aggaatgttctgtggctataaatagccttgcattctttaacgttttcattcattttacacttttcat 9418676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 26867473 - 26867428
Alignment:
Q  143 ctacaattttctttcttaaatttaattttgggaatgagttatgata 188  Q
    |||||| |||||||||||||||||||| | ||| ||||||||||||    
T  26867473 ctacaaatttctttcttaaatttaattataggagtgagttatgata 26867428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 7442805 - 7442702
Alignment:
Q  92 aaatagtcttgcattcttcaagattttcattcattcttcacttttcat--cccctacaattttctttcttaaatttaattttgggaatgagttatgatat 189  Q
    |||||||||||||| |||||| ||||| |||||||||||| |||||||  |  ||| ||||||||||||||||||||||| | ||||||| |||||| ||    
T  7442805 aaatagtcttgcatccttcaacatttttattcattcttcatttttcattacttctaaaattttctttcttaaatttaattataggaatgaattatgagat 7442706  T
Q  190 catg 193  Q
    ||||    
T  7442705 catg 7442702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 42572926 - 42572886
Alignment:
Q  99 cttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  42572926 cttgcatccttcaacattttcattcattcttcacttttcat 42572886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 43107181 - 43107239
Alignment:
Q  76 aatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcactt 134  Q
    |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  43107181 aatgttttatggttataaatagtcttgcatccttcaacatttttattcattcttcactt 43107239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 2287034 - 2286995
Alignment:
Q  100 ttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  2287034 ttgcattcttaaacattttcattcattcttcacttttcat 2286995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 34394853 - 34394771
Alignment:
Q  57 attgtagttacattataggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    |||||||||| | | |||||||||||| |||  |||||| |||||||||||||||| ||||||| ||||| ||||||||||||    
T  34394853 attgtagttataatctaggaatgttttgtggcaataaattgtcttgcattcttcaatattttcaatcatttttcacttttcat 34394771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 1643649 - 1643716
Alignment:
Q  72 taggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcat 139  Q
    |||||| ||||||| | |||||| |||||||||| |||||| | ||||||||| ||||||||||||||    
T  1643649 taggaacgttttatagctataaaaagtcttgcatacttcaataatttcattcactcttcacttttcat 1643716  T

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Target: scaffold0362 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 6690 - 6575
Alignment:
Q  80 ttttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttcatcc--cctacaattttctttcttaaatttaattttgggaat 177  Q
    ||||||| |||||||||||||||||||||| || | ||| |||||||||||||| || || |   |||||||||||| || ||||||| ||||||| | |    
T  6690 ttttatgattataaatagtcttgcattctttaaaagtttgattcattcttcactgtttattcattctacaattttctatcctaaatttcattttggaagt 6591  T
Q  178 gagttatgatatcatg 193  Q
    ||  ||||||||||||    
T  6590 gaaatatgatatcatg 6575  T

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Target: scaffold0072 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 13698 - 13811
Alignment:
Q  82 ttatggttataaatagtcttgcattcttcaagattttcattcattcttcacttttca--tcccctacaattttctttcttaaatttaattttgggaatga 179  Q
    |||||||||||||||| ||||  |  ||||| |||||||||||||||||||||||||  ||  ||||||  ||||||||| ||| ||||||||| | ||     
T  13698 ttatggttataaatagccttgtttcgttcaacattttcattcattcttcacttttcatttcttctacaaacttctttcttgaatataattttggaagtgg 13797  T
Q  180 gttatgatatcatg 193  Q
    ||||||||| ||||    
T  13798 gttatgataccatg 13811  T

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Target: scaffold0376 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 7274 - 7206
Alignment:
Q  59 tgtagttacattataggaatgttttatggttataaatagtcttgcattcttcaagattttcattcattc 127  Q
    |||||||||| | |||||  ||||||||| ||||||||| ||||||| |||||| || |||||||||||    
T  7274 tgtagttacaatctaggatagttttatggctataaatagccttgcatgcttcaacatattcattcattc 7206  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 30844331 - 30844289
Alignment:
Q  80 ttttatggttataaatagtcttgcattcttcaagattttcatt 122  Q
    ||||||||||||||||||||||||||  ||||| |||||||||    
T  30844331 ttttatggttataaatagtcttgcatcgttcaacattttcatt 30844289  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 6877192 - 6877135
Alignment:
Q  79 gttttatggttataaatagtcttgcattcttcaagattttcattcattcttcactttt 136  Q
    ||||| ||| || |||||| |||||||||||||| |||||| ||| ||||||||||||    
T  6877192 gttttgtggctaaaaatagccttgcattcttcaaaattttcgttccttcttcactttt 6877135  T

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