View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15325_low_3 (Length: 784)

Name: NF15325_low_3
Description: NF15325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15325_low_3
NF15325_low_3
[»] chr1 (7 HSPs)
chr1 (14-497)||(34406599-34407101)
chr1 (551-767)||(34407195-34407389)
chr1 (10-297)||(34710097-34710380)
chr1 (185-547)||(34713506-34713881)
chr1 (416-539)||(34709844-34709967)
chr1 (14-133)||(34713882-34714000)
chr1 (430-499)||(34709767-34709836)
[»] chr4 (2 HSPs)
chr4 (585-767)||(861960-862142)
chr4 (587-710)||(47651165-47651288)
[»] chr3 (3 HSPs)
chr3 (589-763)||(37043375-37043550)
chr3 (635-767)||(20614785-20614917)
chr3 (638-750)||(7938456-7938569)
[»] chr5 (2 HSPs)
chr5 (589-760)||(5013596-5013767)
chr5 (639-760)||(24255104-24255225)
[»] chr6 (2 HSPs)
chr6 (589-763)||(16317598-16317773)
chr6 (629-740)||(2694536-2694649)
[»] scaffold1819 (2 HSPs)
scaffold1819 (14-198)||(758-941)
scaffold1819 (8-198)||(272-455)
[»] scaffold1104 (2 HSPs)
scaffold1104 (14-198)||(2280-2463)
scaffold1104 (8-198)||(1794-1977)
[»] chr2 (1 HSPs)
chr2 (675-767)||(37535197-37535289)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Original strand, 34406599 - 34407101
Alignment:
Q  14 atgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34406599 atgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagatgaataagtagtgatgg 34406698  T
Q  114 agaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34406699 agaaaggagtaggagtttgtggtggctttataaccctttcaatta--tcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatg 34406796  T
Q  214 tt--tatgggatgcttcaatgttgatttgga-tttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataannnnnnnaaacac 310  Q
    ||  |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||    
T  34406797 ttcatatgcgatgcttccatgttgatttggattttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataattttttcaaaaac 34406896  T
Q  311 gaaatatgaaatttattctcatacaattccacttaactttta------------------atatttactttactttgtgtttgaaaagtctatttttcgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||                  |||| |||||||||||||||||||||||||||||||||||    
T  34406897 gaaatatgaaatttattctcatacaattccacttaacttttaagatggttgtaaaacatgatatatactttactttgtgtttgaaaagtctatttttcgt 34406996  T
Q  393 gataatagtgtatggggaacaccaaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttat 492  Q
    ||| ||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  34406997 gatgatagtgtctggggaacaccaaactctgcttgccagagatggatcgtgtggtggatgacttttgatcgtgattcctcacacattgtgagaaagttat 34407096  T
Q  493 tctca 497  Q
    |||||    
T  34407097 tctca 34407101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 551 - 767
Target Start/End: Original strand, 34407195 - 34407389
Alignment:
Q  551 tgataaatgttctaatcaaagacgtgtctattataaaagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgt 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  34407195 tgataaatgttctaatcaaagacgtgtctattataaaagaaaaatgttatttcaagcgaaataaaattatcccgagaatttcaagacacatgtggcttgt 34407294  T
Q  651 atgccacccatccactagtttatgattttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgat 750  Q
    |||||||||||||||||||||                      |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34407295 atgccacccatccactagttt----------------------cacctcccatgatttcctctcacagctgctttttattggcttattttcattcttgat 34407372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 34710380 - 34710097
Alignment:
Q  10 tgagatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtg 109  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||| |||||||||||||| | |     
T  34710380 tgagatgaagtgaatgttttgttgcatgttttgcatgcatacacattgtaacgtgcactttctc-ttgtttctccttctctagtagaagaataagcactt 34710282  T
Q  110 atggagaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataatt 209  Q
     ||||| ||||  |||||| ||| | ||| ||||||||| ||| | |||| | ||||| ||||||||| |||   ||||||||| |||||||||| | ||    
T  34710281 gtggaggaagggttaggagattgcgatgggtttataaccttttgagttatattcccttcggtgatattgatg---tgttctctatagcctaaagagagtt 34710185  T
Q  210 gatgtttatgggatgcttcaatgttgatttggatttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataa 297  Q
    | |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  34710184 gttgttcatgagatgcttccatgttgatttggatttggattaagagaggagttgcaatttatagagataagaataaactaattaataa 34710097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 185 - 547
Target Start/End: Complemental strand, 34713881 - 34713506
Alignment:
Q  185 tgttctctagagcctaaagataattgatgtttatgggatgcttcaatgttgatttggatttggattaagagaggagttgcaatttatagatataaaagta 284  Q
    ||||||||||||||||| || | ||| |||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| || | | ||    
T  34713881 tgttctctagagcctaatgagagttgttgttcatgagatgcttccatgttgttttggatttggattaagagaggagttgcaatttatagagatgagaata 34713782  T
Q  285 aactaattaataannnnnnnaaacacgaaatatgaaatttattctcatacaattccacttaacttttaatat--tt----------------actttact 366  Q
    |||||||||||||        |        |||||||||||||||||||||||||||  |||||||||| ||  ||                ||||||||    
T  34713781 aactaattaataatatttttca--------tatgaaatttattctcatacaattccatataacttttaagatggttgtaaagcatgatgtccactttact 34713690  T
Q  367 ttgtgtttgaaaagtcta-tttttcgtgataatagtgtatggggaacac--caaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcg 463  Q
    ||| ||| ||||||| || ||||||||||| ||||||  ||  ||||||   |||||||| ||| | |||||||||||| ||||| ||||||||| ||||    
T  34713689 ttgcgttcgaaaagtttattttttcgtgattatagtgcgtgatgaacacaaaaaactctgtttgcctgaggtggatcgcatggtgtatgacttttaatcg 34713590  T
Q  464 tgattcctgacacattgttagaaagttattctcaaatatttttcgtgatgacagtgcatggtgaacacgaaactacgcctgcca 547  Q
    ||||||| |||||| ||||||||||||| |||||||| |||||| |||||| ||| | ||||| ||||||||| ||| ||||||    
T  34713589 tgattcccgacacaatgttagaaagttactctcaaatgtttttcatgatgagagtacgtggtgtacacgaaaccacgtctgcca 34713506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 416 - 539
Target Start/End: Complemental strand, 34709967 - 34709844
Alignment:
Q  416 aaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctcaaatatttttcgtgatgac 515  Q
    |||||| ||||| |||||||||||| ||||||| |||| |||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||    
T  34709967 aaactccgcttgccagaggtggatcacgtggtgtatgagttttaatcgtgatttccgacacattgttagaaagttattctcaaatgtttttcgtgatgac 34709868  T
Q  516 agtgcatggtgaacacgaaactac 539  Q
    | ||  ||||||||||||||||||    
T  34709867 aatgtgtggtgaacacgaaactac 34709844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 34714000 - 34713882
Alignment:
Q  14 atgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataag---tagtga 110  Q
    |||||||||||| ||| || |||||||||||||||||||||||||||| | |||||||| |||||||||||||||   |||||||||||||   || |||    
T  34714000 atgaagtgaaagtttttttgcatgttttgcatgcatacacattgtaacgtgcactttct-cttgttcctccttct---gtagaagaataagcaatattga 34713905  T
Q  111 tggagaaaggagtaggagtttgt 133  Q
    ||||||||||  |||||| ||||    
T  34713904 tggagaaagggataggagattgt 34713882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 430 - 499
Target Start/End: Complemental strand, 34709836 - 34709767
Alignment:
Q  430 agaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctcaaa 499  Q
    ||||||||||| ||||||||||| ||||  ||||| |||||||| ||| ||||||||||||| |||||||    
T  34709836 agaggtggatcacgtggtggatggctttcaatcgtaattcctgatacactgttagaaagttactctcaaa 34709767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 585 - 767
Target Start/End: Complemental strand, 862142 - 861960
Alignment:
Q  585 aaaagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatct 684  Q
    ||||| |||||| ||||||||||||||||| | ||||||||| |||||| | |||||||| | |||||| ||| |||||||||||||||||||| |||||    
T  862142 aaaaggaaaatgctatttcaagcgaaatagcactatcccgagtatttcacggcacatgtggcatgtatgtcactcatccactagtttatgatttccatct 862043  T
Q  685 ttttctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaatact 767  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  862042 ttttctccccacctcccatgatttccgctcacagctgctttttattggcttgttttcattcttgattgattcgggataatact 861960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 587 - 710
Target Start/End: Complemental strand, 47651288 - 47651165
Alignment:
Q  587 aagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttt 686  Q
    |||||||||| ||||| ||| ||||||| | |||| |||   ||||| |||||||||| | |||||| || |||||||||| ||||||||||||||||||    
T  47651288 aagaaaaatgatatttaaagtgaaatagtaatatctcgaatttttcacgacacatgtggcatgtatgtcatccatccactattttatgattttcatcttt 47651189  T
Q  687 ttctccccacctcccatgatttcc 710  Q
    |||||||  |||||||||||||||    
T  47651188 ttctcccttcctcccatgatttcc 47651165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 589 - 763
Target Start/End: Complemental strand, 37043550 - 37043375
Alignment:
Q  589 gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt 688  Q
    |||||||| |||||||  ||||||| || | |||||||| |||| ||||||||||| | ||||||||| ||||||| ||||||||||||| |||||||||    
T  37043550 gaaaaatgctatttcacacgaaataaaactgtcccgagattttccagacacatgtggcatgtatgccatccatccattagtttatgatttccatcttttt 37043451  T
Q  689 ct-ccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaa 763  Q
    || |||||||||||||||||||| || ||| ||| |||| |||||||||||||||||||||||| |||||||||||    
T  37043450 ctcccccacctcccatgatttccactaacagctgtttttaattggcttattttcattcttgatgcattcgggacaa 37043375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 635 - 767
Target Start/End: Complemental strand, 20614917 - 20614785
Alignment:
Q  635 gacacatgtgacttgtatgccacccatccactagtttatgattttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggct 734  Q
    |||||||||| | |||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  20614917 gacacatgtggcatgtatttcacccatccactagtttatgatttccatctttttctccccacctcccatgatttccgctcacatctgctttttattgact 20614818  T
Q  735 tattttcattcttgatggattcgggacaatact 767  Q
    | |||| ||||||||| ||||||||| ||||||    
T  20614817 tgtttttattcttgatagattcgggataatact 20614785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 638 - 750
Target Start/End: Original strand, 7938456 - 7938569
Alignment:
Q  638 acatgtgacttgtatgccacccatccactagtttatgattttc-atctttttctccccacctcccatgatttcctctcacaactgctttttattggctta 736  Q
    ||||||| | |||||||||| ||||||||| |||| ||||||| || |||||||||| |||||||  ||| ||| |||| | ||| |||| ||||||||     
T  7938456 acatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctcccccgatatccgctcaaagctgattttgattggcttg 7938555  T
Q  737 ttttcattcttgat 750  Q
    | ||||||||||||    
T  7938556 tattcattcttgat 7938569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 589 - 760
Target Start/End: Complemental strand, 5013767 - 5013596
Alignment:
Q  589 gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt 688  Q
    |||||||| ||||| ||||||||||  | |||||| |  ||||||  ||||||||| | |||||||||| ||||||||||| |||||||| || ||||||    
T  5013767 gaaaaatgctatttaaagcgaaataacactatcccaaatatttcaccacacatgtggcatgtatgccactcatccactagtctatgatttccaccttttt 5013668  T
Q  689 ctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcggga 760  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||| |||| || ||||||    
T  5013667 ctccccacctcccatgatttccgctcaaaactgctttctattggcttgttttcattcgtgatcgagtcggga 5013596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 639 - 760
Target Start/End: Complemental strand, 24255225 - 24255104
Alignment:
Q  639 catgtgacttgtatgccacccatccactagtttatgattttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggcttatt 738  Q
    |||||| | |||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||    
T  24255225 catgtggcatgtatgccactcgtccactagtttatgatttccatctttttctctccacctcccatgatttcctctcaaaactactttttattggcttgtt 24255126  T
Q  739 ttcattcttgatggattcggga 760  Q
    ||||||| |||| || ||||||    
T  24255125 ttcattcgtgattgagtcggga 24255104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 589 - 763
Target Start/End: Complemental strand, 16317773 - 16317598
Alignment:
Q  589 gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt 688  Q
    ||||||||||||||||  ||||||| || | ||| |||| |||| ||||||||||| | ||||||||| ||||||| ||| ||||||||| ||||||| |    
T  16317773 gaaaaatgttatttcacacgaaataaaactgtcctgagattttccagacacatgtggcatgtatgccatccatccattagattatgatttccatctttct 16317674  T
Q  689 ct-ccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaa 763  Q
    || |||||||||||||||||||| || ||| ||| |||| ||||| |||||||||||||||||| |||| ||||||    
T  16317673 ctcccccacctcccatgatttccgctgacagctgtttttaattggtttattttcattcttgatgcattcaggacaa 16317598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 629 - 740
Target Start/End: Complemental strand, 2694649 - 2694536
Alignment:
Q  629 tttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatctttttct-ccccacctcccatgatttcctctc-acaactgctttt 726  Q
    |||||||||||||||| | ||||||||||||||||||   |||||||||| |||| |||||| ||||||||||||||||||||  || | || |||||||    
T  2694649 tttcaagacacatgtggcatgtatgccacccatccacagttttatgatttccatcattttctcccccacctcccatgatttccgttcaaaaattgctttt 2694550  T
Q  727 tattggcttatttt 740  Q
    ||||||| ||||||    
T  2694549 tattggcctatttt 2694536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1819 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: scaffold1819
Description:

Target: scaffold1819; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 758 - 941
Alignment:
Q  14 atgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatgg 113  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||| |||||    || | | |||||||| | |||| ||||||||||| || |||||| |    
T  758 atgaagtaaaagtttttttacatgttttgcatgcatacacattgcaacctggtgttccac-ttgttccttcctctctagtagaagaattagcagtgatag 856  T
Q  114 agaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc 198  Q
    |||||||  |||||| |  | ||||||||||||| |||| |||||||||| ||||||   |||| ||||||||||||||||||||    
T  857 agaaagggataggagatatttgtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc 941  T

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Target: scaffold1819; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 455 - 272
Alignment:
Q  8 agtgagatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtag 107  Q
    ||||| ||||| |||||| |||||||||||||||| |||||||||||||| | ||| | |||||  |||||| |||||||||      ||||||  | ||    
T  455 agtgaaatgaaatgaaagttttgttacatgttttggatgcatacacattgcagcctgctctttc-acttgtttctccttctc------aagaattggcag 363  T
Q  108 tgatggagaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc 198  Q
    |||| |||||||   ||| || ||||||||  |||||||| |||| |||||||||| | ||||  ||||| |||| |||||||||||||||    
T  362 tgatagagaaagagatagaagattgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc 272  T

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Target: scaffold1104 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: scaffold1104
Description:

Target: scaffold1104; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 2280 - 2463
Alignment:
Q  14 atgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatgg 113  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||| |||||    || | | |||||||| | |||| ||||||||||| || |||||| |    
T  2280 atgaagtaaaagtttttttacatgttttgcatgcatacacattgcaacctggtgttccac-ttgttccttcctctctagtagaagaattagcagtgatag 2378  T
Q  114 agaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc 198  Q
    |||||||  |||||| |  | ||||||||||||| |||| |||||||||| ||||||   |||| ||||||||||||||||||||    
T  2379 agaaagggataggagatatttgtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc 2463  T

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Target: scaffold1104; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 1977 - 1794
Alignment:
Q  8 agtgagatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtag 107  Q
    ||||| ||||| |||||| |||||||||||||||| |||||||||||||| | ||| | |||||  |||||| |||||||||      ||||||  | ||    
T  1977 agtgaaatgaaatgaaagttttgttacatgttttggatgcatacacattgcagcctgctctttc-acttgtttctccttctc------aagaattggcag 1885  T
Q  108 tgatggagaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc 198  Q
    |||| |||||||   ||| || ||||||||  |||||||| |||| |||||||||| | ||||  ||||| |||| |||||||||||||||    
T  1884 tgatagagaaagagatagaagattgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc 1794  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 767
Target Start/End: Complemental strand, 37535289 - 37535197
Alignment:
Q  675 attttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaatact 767  Q
    |||| ||| ||||||||| ||| | |||| |||||| || |||  || |||| |||||||| |||||||||||||||||||||| | ||||||    
T  37535289 atttccatatttttctcctcactttccataatttccgctaacagatgtttttgattggcttgttttcattcttgatggattcggtataatact 37535197  T

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