View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15325_low_4 (Length: 379)
Name: NF15325_low_4
Description: NF15325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15325_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 43306748 - 43307107
Alignment:
| Q |
16 |
gggtttgcttcaaaaggtttattaaatttatagattcaatggtgaagactaaattatagcaatttaacaggatatgatatgaggtagaaat--------- |
106 |
Q |
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| T |
43306748 |
gggtttgcttcaaaaggtttattaaatttatagattcaatggtgaagactaacttatagcaatttaacaggatatgatatgaggtagaaatcattcattc |
43306847 |
T |
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| Q |
107 |
tatgcaacaaggcattacttacaatcaatgctattttccatttctgttcattattcagtatgatttcatttgaagtaggtaaaatcaagttcaaaagtaa |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43306848 |
tatgtaacaaggcattacttacaatcaatgctattttccatttctgttcattattcagtatgatttcatttgaagtaggtaaaatcaagttcaaaagtaa |
43306947 |
T |
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| Q |
207 |
aaatatcttaccatagttcttcatatgaaatgaattaatttagctcgtgaaaaagtgatgctttacaagaacattgccatatttcttcc--nnnnnnnnn |
304 |
Q |
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| T |
43306948 |
aaatatcttaccatagttcttcatatgaaatgaattaatttagctcgtgaaaaagtgatgctttacaagaacattgccatatttcttccaaaaaaataaa |
43307047 |
T |
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| Q |
305 |
nntcattgtcatattggtgcttatattcacgtattcaatgatgaatcacatttgatgcat |
364 |
Q |
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| T |
43307048 |
attcattgtcatattggtgcttatattcacgtattcaatgatgaatcacatttgatgcat |
43307107 |
T |
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