View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15325_low_5 (Length: 377)

Name: NF15325_low_5
Description: NF15325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15325_low_5
NF15325_low_5
[»] chr4 (7 HSPs)
chr4 (239-375)||(52363102-52363238)
chr4 (24-176)||(52363301-52363454)
chr4 (30-163)||(42883027-42883160)
chr4 (299-366)||(42883347-42883414)
chr4 (302-364)||(42882860-42882922)
chr4 (303-347)||(4158494-4158538)
chr4 (290-366)||(21825018-21825093)
[»] chr8 (10 HSPs)
chr8 (24-176)||(5881956-5882108)
chr8 (263-366)||(25128696-25128797)
chr8 (24-176)||(25128880-25129032)
chr8 (24-174)||(39861237-39861387)
chr8 (239-366)||(5881242-5881369)
chr8 (24-174)||(36731636-36731786)
chr8 (303-366)||(36731967-36732030)
chr8 (297-366)||(25191386-25191455)
chr8 (319-366)||(5882310-5882357)
chr8 (319-366)||(39861550-39861597)
[»] chr2 (8 HSPs)
chr2 (24-176)||(4776613-4776765)
chr2 (239-366)||(4776828-4776955)
chr2 (271-366)||(121414-121508)
chr2 (24-176)||(122458-122610)
chr2 (267-350)||(8911684-8911767)
chr2 (263-366)||(19386405-19386506)
chr2 (61-109)||(8911493-8911541)
chr2 (290-350)||(20203170-20203230)
[»] chr3 (13 HSPs)
chr3 (239-366)||(51827672-51827799)
chr3 (239-366)||(30833780-30833906)
chr3 (239-365)||(28907997-28908122)
chr3 (25-176)||(28908187-28908338)
chr3 (25-176)||(30833971-30834122)
chr3 (25-108)||(51829087-51829170)
chr3 (263-366)||(41710040-41710142)
chr3 (126-176)||(51827905-51827955)
chr3 (319-366)||(28908549-28908596)
chr3 (319-366)||(30834330-30834377)
chr3 (319-366)||(51829384-51829431)
chr3 (290-350)||(38798377-38798437)
chr3 (29-109)||(53948939-53949019)
[»] chr1 (22 HSPs)
chr1 (24-176)||(46285096-46285248)
chr1 (239-366)||(46284864-46284991)
chr1 (28-176)||(6690668-6690816)
chr1 (24-174)||(29859271-29859421)
chr1 (280-365)||(6690952-6691035)
chr1 (239-296)||(6690880-6690937)
chr1 (263-366)||(47052454-47052556)
chr1 (263-361)||(21791326-21791424)
chr1 (263-364)||(29859507-29859608)
chr1 (263-366)||(14886673-14886775)
chr1 (303-366)||(21790860-21790923)
chr1 (24-111)||(21791098-21791185)
chr1 (30-109)||(27651720-27651799)
chr1 (330-366)||(6690410-6690446)
chr1 (290-366)||(16959997-16960072)
chr1 (290-366)||(44233317-44233393)
chr1 (267-350)||(27651948-27652031)
chr1 (303-362)||(29859030-29859089)
chr1 (319-366)||(46285445-46285492)
chr1 (312-366)||(2271226-2271280)
chr1 (263-361)||(5216674-5216772)
chr1 (303-365)||(44234546-44234608)
[»] scaffold0155 (2 HSPs)
scaffold0155 (263-366)||(1625-1727)
scaffold0155 (24-176)||(1390-1542)
[»] chr5 (2 HSPs)
chr5 (263-366)||(42519750-42519852)
chr5 (24-176)||(42519935-42520087)
[»] chr7 (8 HSPs)
chr7 (239-366)||(26774104-26774229)
chr7 (268-366)||(3475012-3475109)
chr7 (290-366)||(43334597-43334672)
chr7 (263-366)||(3163342-3163443)
chr7 (285-365)||(25245526-25245606)
chr7 (290-366)||(30469971-30470046)
chr7 (290-366)||(46427989-46428064)
chr7 (290-350)||(30660379-30660439)
[»] chr6 (4 HSPs)
chr6 (263-365)||(8993428-8993529)
chr6 (263-365)||(9017875-9017976)
chr6 (303-362)||(19653747-19653806)
chr6 (263-361)||(32907540-32907638)
[»] scaffold0301 (1 HSPs)
scaffold0301 (304-365)||(20839-20900)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 52363238 - 52363102
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52363238 atgacagtgaatagtgtaaaccgtaaagaaaccataataataatatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 52363139  T
Q  339 aaattaaaatttgcatcatttgatcaagaggactgct 375  Q
    |||||||||||||||||||||||||||||||||||||    
T  52363138 aaattaaaatttgcatcatttgatcaagaggactgct 52363102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 52363454 - 52363301
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||    
T  52363454 gacaaaatgctgctaatattattgtgtcgggtgtttaagcatttgcgcttttctttcgtttagtagaatatgttcttttaaattttggaagcaatcgttc 52363355  T
Q  124 actcattattctagatattctctataaatcaa-ttttctttaggttcttctaag 176  Q
    | ||||||||| || || ||||||||||| || |||||||||||||||| ||||    
T  52363354 attcattattccaggtactctctataaataaatttttctttaggttcttttaag 52363301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 42883160 - 42883027
Alignment:
Q  30 atgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttcactcat 129  Q
    |||||||||||||| || | || | | ||| |||||| | ||||| |||||||||| | | ||||||| |||||||||||||  ||| || |||| ||||    
T  42883160 atgctgctaatattcttgtatcggatattttagcattcgtgctttgctttcgtttattggcatatgttatttttaattttgggtgcaatcgttcattcat 42883061  T
Q  130 tattctagatattctctataaatcaattttcttt 163  Q
    ||| | ||||| ||| ||||||| ||||||||||    
T  42883060 tatcccagatactctttataaataaattttcttt 42883027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 42883347 - 42883414
Alignment:
Q  299 taaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||| ||||| || ||| |||||||||  |||||| ||||||||||||||| ||||||||||||||    
T  42883347 taaatagttaactaagagaagaaagaataaattatttataaaattaaaatttgaatcatttgatcaag 42883414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 42882922 - 42882860
Alignment:
Q  302 ataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatca 364  Q
    |||||||||||||||| |||| ||||  ||||||||||||||||| |||  ||||||||||||    
T  42882922 ataattaaccaatagaagaaaaaataaattatttctaaaattaaatttttgatcatttgatca 42882860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 4158494 - 4158538
Alignment:
Q  303 taattaaccaatagatgaaagaatattttatttctaaaattaaaa 347  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||    
T  4158494 taattaaccaagagatgaaagaataaattatttctaaaattaaaa 4158538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 21825018 - 21825093
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||| ||||| ||| ||| ||||||| | ||  ||||||||||||||||||| ||||||||||||||    
T  21825018 aatttttggtaaatgattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttggatcatttgatcaag 21825093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 5882108 - 5881956
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||| || |||    
T  5882108 gacaaaatgctgctaatattattgtgtcgggtgtttaaacatttatgcttttctttcgtttagtagaatatgttctttttaattttggaagcaatcgttc 5882009  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  5882008 attcattattccagatactctctataaatcaattttctttaggttcttctaag 5881956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 25128797 - 25128696
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  25128797 aaagaaaccataataatactatcatataattt--ggtaaataattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatatgat 25128700  T
Q  363 caag 366  Q
    ||||    
T  25128699 caag 25128696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 25129032 - 25128880
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||| | |||||||||||||| |||  |||| ||||||||||||||||| || || |||    
T  25129032 gacaaaatgctgctaatattattgtgtcgggtgttttagcatttgtgttttactttcgtttattagcgtatgctctttttaattttggaaccaatcgttc 25128933  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||||||| | || || ||| |||||||||||||||||| | ||||| ||||    
T  25128932 attcattatcccaggtactctttataaatcaattttctttggtttcttgtaag 25128880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 39861387 - 39861237
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    |||||||||||||||||||| || | || ||||||| |||||||| | ||| |||||||||||||| ||||||||||| ||||||| |  ||| || |||    
T  39861387 gacaaaatgctgctaatattcttgtatcgggtgttttagcatttgtgttttgctttcgtttagtagcatatgttctttataattttaggtgcaatcgttc 39861288  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttcta 174  Q
    | ||||||| || | |  ||| |||||||||||||||||| ||||||||||    
T  39861287 attcattatccttggtgctctttataaatcaattttctttgggttcttcta 39861237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 366
Target Start/End: Complemental strand, 5881369 - 5881242
Alignment:
Q  239 atgacagtgaatagtgt-aaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttct 337  Q
    |||||| |||||||||| |||||  ||||||||||||||||||||||||||||| |||||  || |||| |||||| | | |||||||||  ||||||||    
T  5881369 atgacattgaatagtgttaaaccgtaaagaaaccataataatactatcatataa-ttttgggaactaatcaaccaagaaaagaaagaatacattatttct 5881271  T
Q  338 aaaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||| |||| ||||||| ||||||    
T  5881270 aaaattaaagtttggatcatttcatcaag 5881242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 36731786 - 36731636
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    |||||||||||||||||||| || | || ||||||| | |||||| | ||| |||||||||||||| ||||||||||| |||||||||  ||| || | |    
T  36731786 gacaaaatgctgctaatattcttgtatcgggtgttttaacatttgtgttttgctttcgtttagtagcatatgttctttataattttgggtgcaatcgtcc 36731687  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttcta 174  Q
    | ||||||| || | |  ||| ||||||||||||||| || ||||||||||    
T  36731686 attcattatccttggtgctctttataaatcaattttccttgggttcttcta 36731636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 36731967 - 36732030
Alignment:
Q  303 taattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||| ||| |||||||||  ||||||||||||||||||||||  |||||||||||||    
T  36731967 taattaaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaag 36732030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 25191386 - 25191455
Alignment:
Q  297 gataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||| || ||| |||||||||  |||||||||||||||||||||| |||| |||||||||    
T  25191386 gataaatagttaactaagagaagaaagaataaattatttctaaaattaaaatttgaatcagttgatcaag 25191455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 5882310 - 5882357
Alignment:
Q  319 gaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||  |||||| ||||||||||||||| ||||||||||||||    
T  5882310 gaaagaataaattatttttaaaattaaaatttggatcatttgatcaag 5882357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 39861550 - 39861597
Alignment:
Q  319 gaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||  ||||||||||||||||||||||  |||||||||||||    
T  39861550 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaag 39861597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 4776613 - 4776765
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||    
T  4776613 gacaaaatgttgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagtagaatatgttctttttaattttggaagcaatcgttc 4776712  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||||||| | || || |||||||||||||||||||||||||||||||||||    
T  4776713 attcattatcccaggtactctctataaatcaattttctttaggttcttctaag 4776765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 366
Target Start/End: Original strand, 4776828 - 4776955
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  4776828 atgacagtgaatagtgtaaaccgtaaagaaaccataataatattatcatataatttttggtaaataattaaccaagcgaagaaagaatattttatttcta 4776927  T
Q  339 aaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||||||||||||||||||||    
T  4776928 aaattaaaatttgcatcatttgatcaag 4776955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 121508 - 121414
Alignment:
Q  271 cataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  121508 cataataatactatcatataattttgg-taaataattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 121414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 122610 - 122458
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||||||||||||||| |||| ||||||| ||||| || | ||| ||||||||||||||  ||||||||||||||||||||||  | || |||    
T  122610 gacaaaatgctgctaatattattgtgtcgggtgttttagcatctgtgttttgctttcgtttagtagcgtatgttctttttaattttggaactaatcgttc 122511  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||||||| | || |  ||| |||||||||||||||||| | ||||| ||||    
T  122510 attcattatcccaggtgctctttataaatcaattttctttggtttcttgtaag 122458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 8911684 - 8911767
Alignment:
Q  267 aaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaattt 350  Q
    ||||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||    
T  8911684 aaaccataataataccattagagaatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaattt 8911767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 19386506 - 19386405
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||| ||||||||||| || | | |||||||  ||||||||||| ||| ||| ||||||| | ||  ||||||||||||||||||| ||||||||||    
T  19386506 aaagaaatcataataataccat-agagaatttttagtaaataattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttggatcatttgat 19386409  T
Q  363 caag 366  Q
    ||||    
T  19386408 caag 19386405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 8911493 - 8911541
Alignment:
Q  61 agcatttgcgctttactttcgtttagtagaatatgttctttttaatttt 109  Q
    |||||||| | ||| |||||||||||||| ||| |||||||||||||||    
T  8911493 agcatttgtgttttgctttcgtttagtagcataagttctttttaatttt 8911541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 20203170 - 20203230
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaattt 350  Q
    |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||    
T  20203170 aatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaattt 20203230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 239 - 366
Target Start/End: Complemental strand, 51827799 - 51827672
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||    
T  51827799 atgacagtgaatagtgtaaaccgtaaagaaaccataataatactatcatataatttttggtaaataattaaccaagagaagatagaatattttatttcta 51827700  T
Q  339 aaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||||||||||||||||||||    
T  51827699 aaattaaaatttgcatcatttgatcaag 51827672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 239 - 366
Target Start/End: Complemental strand, 30833906 - 30833780
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||    
T  30833906 atgacagtgaatagtgtaaactgtgaagaaaccataataatactatcatataatttttggtaaataattaaccaagagaagaaag-atattttatttcta 30833808  T
Q  339 aaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||||||||||||||| ||||    
T  30833807 aaattaaaatttgcatcatttgaacaag 30833780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 239 - 365
Target Start/End: Complemental strand, 28908122 - 28907997
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||| |||| || ||| ||||| ||||||||||||||    
T  28908122 atgacagtgaatagtgtaaactgtaaagaaaccataataatactatcatataatttttggtaaataactaactaagagaagaaag-atattttatttcta 28908024  T
Q  339 aaattaaaatttgcatcatttgatcaa 365  Q
    ||||||||||||||||||||| |||||    
T  28908023 aaattaaaatttgcatcatttaatcaa 28907997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 28908338 - 28908187
Alignment:
Q  25 acaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttca 124  Q
    |||||||||||||||||||||| ||||| |||||| | |||||| | ||| |||||||||||||| ||| |||||||||||||||||||||| || ||||    
T  28908338 acaaaatgctgctaatattattgtgtcaagtgttttatcatttgtgtttttctttcgtttagtagcatacgttctttttaattttggaagcaatcgttca 28908239  T
Q  125 ctcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
     ||||||| | || || ||| |||||||||||||| ||||| ||||||||||    
T  28908238 ttcattatcccaggtactctttataaatcaattttatttagtttcttctaag 28908187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 30834122 - 30833971
Alignment:
Q  25 acaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttca 124  Q
    |||||||||||||||||||||| |||| |||||||||| ||||  | ||| |||||||||||||| |||||||  ||||||||||||||||| || ||||    
T  30834122 acaaaatgctgctaatattattgtgtcgggtgtttaagtatttttgtttttctttcgtttagtagcatatgtttattttaattttggaagcaatcgttca 30834023  T
Q  125 ctcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
     ||||||| | || || ||| ||||||||||||||||||||| | |||||||    
T  30834022 ttcattatcccaggtactctttataaatcaattttctttagggttttctaag 30833971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 51829170 - 51829087
Alignment:
Q  25 acaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattt 108  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  51829170 acaaaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagtagaatatgttctttttaattt 51829087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 41710040 - 41710142
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||  ||||||||||    
T  41710040 aaagaaaccataataataccattagagaatttttggtaaataattaatcaaaaaa-gaaagaataaattgtttctaaaattaaaatttagatcatttgat 41710138  T
Q  363 caag 366  Q
    ||||    
T  41710139 caag 41710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 51827955 - 51827905
Alignment:
Q  126 tcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||    
T  51827955 tcattattctaggtactctctataaatcaattttctttaggttcttctaag 51827905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 28908549 - 28908596
Alignment:
Q  319 gaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||    
T  28908549 gaaagaataaattatttctaaaattaaaatttggataatttgatcaag 28908596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 30834330 - 30834377
Alignment:
Q  319 gaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||    
T  30834330 gaaagaataaattatttctaaaattaaaatttggataatttgatcaag 30834377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 51829384 - 51829431
Alignment:
Q  319 gaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||  |||||||||||||||||||||| ||||||| ||||||    
T  51829384 gaaagaataaattatttctaaaattaaaatttggatcatttcatcaag 51829431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 38798437 - 38798377
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaattt 350  Q
    |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||    
T  38798437 aatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaattt 38798377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 53948939 - 53949019
Alignment:
Q  29 aatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaatttt 109  Q
    ||||||||||||||| || | || | ||||  |||||||| | ||| |||||||||||||| ||| ||||||||| |||||    
T  53948939 aatgctgctaatattcttgtatcggatgttctagcatttgtgttttgctttcgtttagtagcataagttcttttttatttt 53949019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 46285248 - 46285096
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||| ||||||||||| |||  |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| || |||    
T  46285248 gacaaaatgctcctaatattattgtgttgggtgtttaagcatttgtgcttatctttcgtttagtagaatatgttctttttaattttggaagcaatcgttc 46285149  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||| ||||| || || |||||||||||||||||||||||||||||||||||    
T  46285148 attcagtattccaggtactctctataaatcaattttctttaggttcttctaag 46285096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 239 - 366
Target Start/End: Complemental strand, 46284991 - 46284864
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    |||||||||||||||||||||   ||||||| |||||||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  46284991 atgacagtgaatagtgtaaactgtaaagaaagcataataatactatcataaaatttttggtaaataattaaccaagagaagaaagaatattttatttcta 46284892  T
Q  339 aaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||||||||||||||||||||    
T  46284891 aaattaaaatttgcatcatttgatcaag 46284864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 6690668 - 6690816
Alignment:
Q  28 aaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttcactc 127  Q
    |||||||| |||||||||| |||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| ||    
T  6690668 aaatgctgttaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 6690767  T
Q  128 attattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    ||||| | || || ||||||||||| |||||||||||||||||||||||    
T  6690768 attatcccaggtactctctataaattaattttctttaggttcttctaag 6690816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 29859271 - 29859421
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    |||||||||||||||||||| || | || ||||||| |||||||| | ||| ||||||||||| || ||||||||||| ||||||||   ||| || |||    
T  29859271 gacaaaatgctgctaatattcttgtatcgggtgttttagcatttgtgttttgctttcgtttagcagcatatgttctttataattttgcgtgcaatcgttc 29859370  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttcta 174  Q
    ||||||||| || | |  ||| |||||||||||||||||| | ||||||||    
T  29859371 actcattatccttggtgctctttataaatcaattttctttggattcttcta 29859421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 6690952 - 6691035
Alignment:
Q  280 actatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaa 365  Q
    ||||||||||||| ||||  |||||||||||||  ||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  6690952 actatcatataatatttggaaaataattaaccag-agaagaaagaatattttatttctaaa-ttaaaatttgaatcatttgatcaa 6691035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 6690880 - 6690937
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataattttt 296  Q
    ||||||||||| ||||||||||  |||||||||||||||||| |||||||||||||||    
T  6690880 atgacagtgaacagtgtaaaccgtaaagaaaccataataatattatcatataattttt 6690937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 47052556 - 47052454
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||| ||||||||||||||  ||||||||||    
T  47052556 aaagaaaccataataataccattagagaatttttggtaaataattaatcaa-aaaagaaagaataaattgtttttaaaattaaaatttagatcatttgat 47052458  T
Q  363 caag 366  Q
    ||||    
T  47052457 caag 47052454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 21791326 - 21791424
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttga 361  Q
    ||||||| | ||||||||  ||||||||||||||| | ||||||||| ||| | | |||||||||  ||||||||||||||||| |||| || ||||||    
T  21791326 aaagaaatcgtaataatagcatcatataatttttggtgaataattaatcaacacaagaaagaataaattatttctaaaattaaattttggattatttga 21791424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 364
Target Start/End: Original strand, 29859507 - 29859608
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||| | ||||||||  |||||| |||||||| | ||||||||| ||| | | |||||||||  |||||| |||||||||||||||  |||||||||    
T  29859507 aaagaaatcgtaataataacatcatagaatttttggtgaataattaatcaaaacaagaaagaataaattatttttaaaattaaaatttgtctcatttgat 29859606  T
Q  363 ca 364  Q
    ||    
T  29859607 ca 29859608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 14886673 - 14886775
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    |||||||| |||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||  |||||||| |    
T  14886673 aaagaaactataataataccattagagaatttttggtaaataattaatcaaaaaa-gaaagaataaattgtttctaaaattaaaatttagatcatttgct 14886771  T
Q  363 caag 366  Q
    ||||    
T  14886772 caag 14886775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 21790923 - 21790860
Alignment:
Q  303 taattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||| ||| ||||||||   ||||||||||||||||||||||  |||||||||||||    
T  21790923 taattaaccaagagaagaaagaattaattatttctaaaattaaaatttggctcatttgatcaag 21790860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 21791098 - 21791185
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttgg 111  Q
    |||||||||||| ||||||| || | || ||||||| || ||||| | ||| |||| ||||||||| ||||||||||| |||||||||    
T  21791098 gacaaaatgctgttaatattcttgtatcgggtgttttaggatttgtgttttgcttttgtttagtagcatatgttctttataattttgg 21791185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 27651720 - 27651799
Alignment:
Q  30 atgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaatttt 109  Q
    |||||||||||||| |||| || | ||||  |||||||| | ||| |||||||||||||| ||| |||||||||||||||    
T  27651720 atgctgctaatattcttttatcggatgttctagcatttgtgttttgctttcgtttagtagcataagttctttttaatttt 27651799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 6690446 - 6690410
Alignment:
Q  330 ttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6690446 ttatttctaaaattaaaatttggatcatttgatcaag 6690410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 16959997 - 16960072
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||||||||| ||| ||| ||||||| | ||  ||||||||||||||||||| || |||||||||||    
T  16959997 aatttttggtaaataattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttggataatttgatcaag 16960072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 44233393 - 44233317
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||| ||||| ||| |||  ||| ||||  |||||| ||||||||||||||| ||||||||||||||    
T  44233393 aatttttggtaaatgattaatcaagagaataaataataaattatttttaaaattaaaatttggatcatttgatcaag 44233317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 27651948 - 27652031
Alignment:
Q  267 aaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaattt 350  Q
    ||||||||||||||| || | | |||||||| ||||||||||| ||| | | ||||||| |  || ||||||||||||||||||    
T  27651948 aaaccataataataccattacagaatttttggtaaataattaatcaaaaaaagaaagaacaaattgtttctaaaattaaaattt 27652031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 29859089 - 29859030
Alignment:
Q  303 taattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    |||||||| || ||| |||||||||  ||||||||||||||||||||||  |||||||||    
T  29859089 taattaactaagagaagaaagaataaattatttctaaaattaaaatttgactcatttgat 29859030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 46285445 - 46285492
Alignment:
Q  319 gaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||    
T  46285445 gaaagaataaattatttctaaaattaaaatttggataatttgatcaag 46285492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 2271226 - 2271280
Alignment:
Q  312 aatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||| |||||||||  ||||||||||||||||| |||  ||||||||||||||    
T  2271226 aatagaagaaagaatacattatttctaaaattaaatttttgatcatttgatcaag 2271280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 5216772 - 5216674
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttga 361  Q
    ||||||| | ||||||||  ||||||||||||| | | ||||||||| ||| | | |||| ||||  ||||||||||||||||| |||| || ||||||    
T  5216772 aaagaaatcgtaataatagcatcatataattttgggtgaataattaatcaacacaagaaataataaattatttctaaaattaaattttgaattatttga 5216674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 44234546 - 44234608
Alignment:
Q  303 taattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaa 365  Q
    ||||||||||| |||  ||| ||||  |||||||||||||||||||| | |||||||||||||    
T  44234546 taattaaccaagagaaaaaataataaattatttctaaaattaaaattcggatcatttgatcaa 44234608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 1625 - 1727
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1625 aaagaaaccataataatactatcatataattttgg-taaataattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgat 1723  T
Q  363 caag 366  Q
    ||||    
T  1724 caag 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 1390 - 1542
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||| | ||| |||||||||| |||  ||||||||||||||||||||||  | || |||    
T  1390 gacaaaatgctgctaatattattgtgtcgggtgttttagcatttgtgttttgctttcgtttaatagcgtatgttctttttaattttggaactaatcgttc 1489  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||||||| | ||||  ||| |||||||||||||||||| | ||||| ||||    
T  1490 attcattatcccagatgctctttataaatcaattttctttggtttcttgtaag 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 42519852 - 42519750
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42519852 aaagaaaccataataatactatcatataattttgg-taaataattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgat 42519754  T
Q  363 caag 366  Q
    ||||    
T  42519753 caag 42519750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 42520087 - 42519935
Alignment:
Q  24 gacaaaatgctgctaatattattttgtcaggtgtttaagcatttgcgctttactttcgtttagtagaatatgttctttttaattttggaagcattctttc 123  Q
    ||||||||||||||||||||||| |||| ||||||| ||||| || | ||| |||||||||||||| |||||||||||||||||||||||  | || |||    
T  42520087 gacaaaatgctgctaatattattgtgtcgggtgttttagcatctgtgttttgctttcgtttagtagcatatgttctttttaattttggaactaatcattc 42519988  T
Q  124 actcattattctagatattctctataaatcaattttctttaggttcttctaag 176  Q
    | ||||||| | || |  ||| |||||||||||||| ||| | ||||| ||||    
T  42519987 attcattatcccaggtgctctttataaatcaattttatttggtttcttgtaag 42519935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 366
Target Start/End: Complemental strand, 26774229 - 26774104
Alignment:
Q  239 atgacagtgaatagtgtaaacctaaaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttcta 338  Q
    ||||||||||||||||||||   |||  | ||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  |||||||||    
T  26774229 atgacagtgaatagtgtaaag--aaaccataccataataataccattagagaatttttggtaaataattaatcaaaaaaagaaagaataaattatttcta 26774132  T
Q  339 aaattaaaatttgcatcatttgatcaag 366  Q
    ||||||||||||  ||||||||||||||    
T  26774131 aaattaaaatttagatcatttgatcaag 26774104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 3475109 - 3475012
Alignment:
Q  268 aaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||  ||||||||||||||    
T  3475109 aaccataataataccattagagaatttttggtaaataattaatcaaaaaa-gaaagaataaattgtttctaaaattaaaatttagatcatttgatcaag 3475012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 43334597 - 43334672
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||||||||| ||| ||| ||||||| | ||  ||||||||||||||||||| ||||||||||||||    
T  43334597 aatttttggtaaataattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttggatcatttgatcaag 43334672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 3163342 - 3163443
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||| ||||||||||| || | | |||||||| ||||||||||| ||| ||| ||||||| | ||  ||||||||||||||||||| ||||||| ||    
T  3163342 aaagaaatcataataataccat-agagaatttttggtaaataattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttggatcatttaat 3163439  T
Q  363 caag 366  Q
    ||||    
T  3163440 caag 3163443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 25245526 - 25245606
Alignment:
Q  285 catataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaa 365  Q
    |||| ||||||||| ||  |||||||||| ||| |||||||||  ||||||||||||||||||  || |||| ||||||||    
T  25245526 catagaatttttgaaaagaaattaaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatcacttgatcaa 25245606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 30469971 - 30470046
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||| ||||| ||| ||| ||||||| | ||  ||||||||||||||||||| ||||||||||||||    
T  30469971 aatttttggtaaatgattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttggatcatttgatcaag 30470046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 46427989 - 46428064
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 366  Q
    |||||||| ||||||||||| ||| ||| ||||||| | ||  ||||||||||||||||||  ||||||||||||||    
T  46427989 aatttttggtaaataattaatcaagagaagaaagaaaaattg-tttctaaaattaaaatttagatcatttgatcaag 46428064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 30660379 - 30660439
Alignment:
Q  290 aatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaattt 350  Q
    |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||    
T  30660379 aatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaattt 30660439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 8993428 - 8993529
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||  ||||||||||    
T  8993428 aaagaaaccataataataccattagagaatttttggtaaataattaatcaa-aaaagaaagaataaattgtttctaaaattaaaatttagatcatttgat 8993526  T
Q  363 caa 365  Q
    |||    
T  8993527 caa 8993529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 9017875 - 9017976
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||||||||||| || | | |||||||| ||||||||||| ||| | | |||||||||  || ||||||||||||||||||  ||||||||||    
T  9017875 aaagaaaccataataataccattagagaatttttggtaaataattaatcaa-aaaagaaagaataaattgtttctaaaattaaaatttagatcatttgat 9017973  T
Q  363 caa 365  Q
    |||    
T  9017974 caa 9017976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 19653747 - 19653806
Alignment:
Q  303 taattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgat 362  Q
    ||||||||||| ||| |||||||||  |||||||||||||||||||||| ||||||||||    
T  19653747 taattaaccaagagaagaaagaataaattatttctaaaattaaaatttggatcatttgat 19653806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 32907638 - 32907540
Alignment:
Q  263 aaagaaaccataataatactatcatataatttttgataaataattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttga 361  Q
    ||||||| | ||||||||  |||||| |||||||| | ||||||||| ||| | | |||||||||  ||||||||||||||||| |||| || ||||||    
T  32907638 aaagaaatcgtaataatagcatcatagaatttttggtgaataattaatcaaaacaagaaagaataaattatttctaaaattaaattttggattatttga 32907540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 20900 - 20839
Alignment:
Q  304 aattaaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaa 365  Q
    |||||||||| ||| |||||||||  ||||||||||||||||||  || |||| ||||||||    
T  20900 aattaaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatcacttgatcaa 20839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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