View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15325_low_6 (Length: 229)
Name: NF15325_low_6
Description: NF15325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15325_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 43620603 - 43620438
Alignment:
| Q |
51 |
attaagatgtttaaaaagaaaggatctcatgaagcaatcaatatatatatcaccttgttaaataggatgcctaatagagcaagttcag-tagctttttca |
149 |
Q |
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| T |
43620603 |
attaagatgtttaaaaagaaaggatctcatgaagcattatat-tatatatcaccttgttaaataggatgcctaatagagcaagttcagatagctttgtca |
43620505 |
T |
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| Q |
150 |
atatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagt |
216 |
Q |
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| T |
43620504 |
atatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagt |
43620438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 43627180 - 43627071
Alignment:
| Q |
102 |
accttgttaaataggatgcctaatagagcaagttcagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtg |
201 |
Q |
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| T |
43627180 |
accttgttagctaggatacccaaaagagctagctcaacagctttgtctatgtctgcatcatcgaaaattatgagaggtgacttgcctcctaattcaagtg |
43627081 |
T |
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| Q |
202 |
aaacatgttt |
211 |
Q |
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| T |
43627080 |
aaacatgttt |
43627071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 43620657 - 43620623
Alignment:
| Q |
16 |
cctgtgttcagaaaaaggaaaaatgaaaggttggc |
50 |
Q |
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| T |
43620657 |
cctgtgttcagaaaaaggaaaaatgaaaggttggc |
43620623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 32407384 - 32407498
Alignment:
| Q |
100 |
tcaccttgttaaataggatgcctaatagagcaagttcagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaag |
199 |
Q |
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| T |
32407384 |
tcaccttattaaataaaatgccaaggagagcaagttcagcagctttattaacatcagcatcatcaaaaattaagaggggtgattttcctcctaattcaag |
32407483 |
T |
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| Q |
200 |
tgaaacatgtttcaa |
214 |
Q |
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| T |
32407484 |
tgaaactggtttcaa |
32407498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 32434437 - 32434349
Alignment:
| Q |
114 |
aggatgcctaatagagcaagttcagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtga |
202 |
Q |
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| T |
32434437 |
aggattccaaatagagcgagatcaacagctttatcaacatcagcatcatcgaaaattaaaacaggcgacttgcctcctaattcaagtga |
32434349 |
T |
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