View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15326_high_11 (Length: 245)

Name: NF15326_high_11
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15326_high_11
NF15326_high_11
[»] chr5 (5 HSPs)
chr5 (16-245)||(32074980-32075209)
chr5 (54-226)||(31005811-31005983)
chr5 (132-206)||(31010497-31010571)
chr5 (132-184)||(30999562-30999614)
chr5 (132-184)||(31002726-31002778)
[»] chr3 (2 HSPs)
chr3 (21-206)||(26785581-26785766)
chr3 (135-206)||(26765479-26765550)
[»] chr7 (2 HSPs)
chr7 (125-184)||(41562605-41562664)
chr7 (131-181)||(41511435-41511485)
[»] chr8 (1 HSPs)
chr8 (132-169)||(1963531-1963568)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 32074980 - 32075209
Alignment:
Q  16 cttccttcactctacacccaactttccaatcctctactatcatcttactattaaatggttggtcaatatatattagaaaagtcaaaaatgaaaccccagc 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  32074980 cttccttcactctacacccaactttccaatcctctaccatcatcttactattaaatggttggtcaatatatattggtaaagtcaaaaatggaaccccagc 32075079  T
Q  116 aacaagactttcctttgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccattccataatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32075080 aacaagactttcctttgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccattccataatc 32075179  T
Q  216 aatcccatgtgatgagcaccacaaatttcc 245  Q
    ||||||||||||||||||||||||||||||    
T  32075180 aatcccatgtgatgagcaccacaaatttcc 32075209  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 31005983 - 31005811
Alignment:
Q  54 atcatcttactattaaatggttggtcaatatatattagaaaagtcaaaaatgaaaccccagcaacaagactttcctttgttgaattccaaccacaatgag 153  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||||  |  ||||||  || ||  |  |||||||| ||||||||||||||||| |    
T  31005983 atcatcttactattaaatggttggtccaaatttattggaaaagtcaaaagaggtaccccataaataactccatcctttgtggaattccaaccacaatgtg 31005884  T
Q  154 accaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccattccataatcaatcccatgtg 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  31005883 accaaaatccaccaatagaagaatgtgacaacactctcaattggttacaccattccaaaatcaatcccatgtg 31005811  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 31010571 - 31010497
Alignment:
Q  132 gttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccat 206  Q
    ||||||||||| |||||||| |||||||| ||||| |||| |  |||   ||| |||||||||||||||||||||    
T  31010571 gttgaattccacccacaatgtgaccaaaaaccacctatagcactatgcatcaacactctcaattggtcacaccat 31010497  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 30999614 - 30999562
Alignment:
Q  132 gttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaa 184  Q
    ||||||||||| |||||||||  |||||||||||| ||||||| ||| |||||    
T  30999614 gttgaattccatccacaatgactccaaaatccacctatagaagaatgagacaa 30999562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 31002778 - 31002726
Alignment:
Q  132 gttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaa 184  Q
    ||||||||||| |||||||||  |||||||||||| ||||||| ||| |||||    
T  31002778 gttgaattccatccacaatgactccaaaatccacctatagaagaatgagacaa 31002726  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 26785766 - 26785581
Alignment:
Q  21 ttcactctacacccaactttccaatcctctactatcatcttactattaaatggttggtcaatatatattagaaaagtcaaaaatgaaaccccagcaacaa 120  Q
    |||||||| ||||||| |||||||||||| ||||| ||||||||| | | |||||| || | |   | | |||| || ||||| | |||||||| || ||    
T  26785766 ttcactctccacccaattttccaatcctcaactataatcttactaattagtggttgatccaaaacaagtggaaatgttaaaaaaggaaccccagaaaaaa 26785667  T
Q  121 gactttcctttgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccat 206  Q
     || |||  |   |||||||||||||||||| | |||| | ||||| |||||||||||| |||| || ||||||||||||||||||    
T  26785666 caccttcaataactgaattccaaccacaatgtgtccaataaccacctatagaaggatgtaacaataccctcaattggtcacaccat 26785581  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 26765550 - 26765479
Alignment:
Q  135 gaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccat 206  Q
    ||||||||||||||||| | |||| | ||||| ||||||||||||||||| ||  |||||||||||||||||    
T  26765550 gaattccaaccacaatgtgtccaataaccacctatagaaggatgtgacaataccgtcaattggtcacaccat 26765479  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 41562664 - 41562605
Alignment:
Q  125 ttcctttgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaa 184  Q
    |||| |||||||||||||||||||||||||  ||||||||||| | ||||||||||||||    
T  41562664 ttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaa 41562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 41511485 - 41511435
Alignment:
Q  131 tgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtga 181  Q
    ||||||||||||||||||||||| | ||||||||||||| |||| ||||||    
T  41511485 tgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtga 41511435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 1963568 - 1963531
Alignment:
Q  132 gttgaattccaaccacaatgagaccaaaatccaccaat 169  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  1963568 gttgaattccaaccacaatgagacaaaaacccaccaat 1963531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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