View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15326_high_12 (Length: 243)
Name: NF15326_high_12
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35977764 - 35977990
Alignment:
| Q |
1 |
tacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagtttta |
100 |
Q |
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| T |
35977764 |
tacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagtttta |
35977863 |
T |
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| Q |
101 |
agggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgctatgaaagctttgctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35977864 |
agggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgctatgaaagctttgctcaa |
35977963 |
T |
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| Q |
201 |
cttttcttatccttcatcaagtaccct |
227 |
Q |
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| T |
35977964 |
cttttcttatccttcatcaagtaccct |
35977990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 35967585 - 35967800
Alignment:
| Q |
9 |
gaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctct |
108 |
Q |
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| T |
35967585 |
gaggctgcaggagctttgtcaccaaagaaagtggagtttgcctaagtactctgccttgaatgtcgatggtccaccacacaaaccaagctttaagggctct |
35967684 |
T |
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| Q |
109 |
gtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgctatgaaagctttgctcaacttttctt |
208 |
Q |
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| T |
35967685 |
gtctttgtcaatggtttaaccttta---cttctgatgcttttcattcctccaaagaagctcacaaccaagctgctctgaaagctttgctcaacttttctt |
35967781 |
T |
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| Q |
209 |
atccttcatcaagtaccct |
227 |
Q |
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|||||||||||||||||| |
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| T |
35967782 |
ctccttcatcaagtaccct |
35967800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 35955155 - 35955369
Alignment:
| Q |
13 |
ctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtct |
112 |
Q |
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||||||||| | |||||||||||| ||||||||||||| | || ||| || | ||||||| |||||||||||||||||||| |||||||||||||| | |
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| T |
35955155 |
ctgcaggagctgtgtcaccggagacggtggagtttgcctaagtattctgcctttcatgttgacggtccaccacacaatccaagctttaagggctctgttt |
35955254 |
T |
|
| Q |
113 |
ttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgctatgaaagctttgctcaacttttcttatcc |
212 |
Q |
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| T |
35955255 |
ttgtgaatggccttacctttacttcttctgataccttcaattcctccggagaagctcaaaaccaagctgctatgaaagctttccgcaacttcacttctcc |
35955354 |
T |
|
| Q |
213 |
ttcatcaagtaccct |
227 |
Q |
| |
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|| |||||||||||| |
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| T |
35955355 |
tttatcaagtaccct |
35955369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 35950416 - 35950545
Alignment:
| Q |
84 |
acacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgct |
183 |
Q |
| |
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|||||| ||||| ||||| | |||||| |||||||||| | |||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||| |
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| T |
35950416 |
acacaagccaagctttaatgcctctgttcatgtcaatggtgtcacctttgcttcttctgatgctttcaattccgccaaagaagctcaaaaccaagctgct |
35950515 |
T |
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| Q |
184 |
atgaaagctttgctcaacttttcttatcct |
213 |
Q |
| |
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||||||||||| | ||||||| ||| |||| |
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| T |
35950516 |
atgaaagctttccgcaactttacttctcct |
35950545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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