View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15326_high_3 (Length: 513)
Name: NF15326_high_3
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 21825326 - 21825695
Alignment:
| Q |
19 |
ggagtgactgagtgggaagtatatataacactattgcatgcgatttgtgccttcgcaataatgtggcaaagcat-----------------ttgtgacct |
101 |
Q |
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| T |
21825326 |
ggagtgactgagtgggaagtatatataaaactattgcatgcgatttgtgccttcgcaataatgtggcaaagcatgcttgcagccagagcatttgttacct |
21825425 |
T |
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| Q |
102 |
tagctacccttcaaagctaagccaaccccacgctttaatgagcacattattatgtatagggcactatggagcctctaaatttttacaaactaattttgtt |
201 |
Q |
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| T |
21825426 |
tagctactcttctaagctaagccaaccccacgctttaatgagcacattattatgtatagggcactatggagcctctaaatttttacaaactaattttgtt |
21825525 |
T |
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| Q |
202 |
aagtgtatgttttaataaactatgggtttaaaggagttgaaaagtgtagcttttgtcaaatcgtggtgatttaccatgattatttcatttcactgcaaca |
301 |
Q |
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| T |
21825526 |
aagtgtatgttttaataaactatgggtttaaaggagttgaaaagtgtagcttttgtcaaatcgtggtgatttaccatgattatttcatttcactacaaca |
21825625 |
T |
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| Q |
302 |
ttttaatctaccgcaatgcctcaaatgttgtctaatattaaagaaagtgtttgtctaaaacaaatggtta |
371 |
Q |
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| T |
21825626 |
ttttaatccaccgcaatgcctcaaatgttgtctaatattaaagaaagtgtttgtctaaaacaaatggtta |
21825695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 375 - 505
Target Start/End: Original strand, 21829222 - 21829353
Alignment:
| Q |
375 |
taaagtggttaatgaccttcatcaaacgacgaatcgttcgnnnnnnncttgaatttgatttttggatggcacaattttt-accagact-tacttatttca |
472 |
Q |
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| T |
21829222 |
taaagtggttaatgaccttcatcaaacgacgaatcgttcgaaaaaat-ttgaatttgatttttggatgccacaattttttaccagactatacttatttca |
21829320 |
T |
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| Q |
473 |
cagccaaactatagactatcagagtttcatttc |
505 |
Q |
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| T |
21829321 |
cagccaaactctagactaccagagtttcatttc |
21829353 |
T |
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