View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15326_high_5 (Length: 428)
Name: NF15326_high_5
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 121 - 420
Target Start/End: Original strand, 29316881 - 29317180
Alignment:
| Q |
121 |
ttttaccaagtttatattgttaaaatcactttaatttctccnnnnnnntgaatgtacccataaacttttatagtatcaaataatgggagaaaataactca |
220 |
Q |
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| T |
29316881 |
ttttaccaagtttatattgttaaaatcactttaatttctccaaaaaaatgaatgtacccataaacttttatagtatcaaataatgggagaaaataactca |
29316980 |
T |
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| Q |
221 |
cctggaggatcacaaaacaagcccaactaaagcatcctatagtgatcaacacagatccaagtattgtatgatgagcacttgtgccactgctatgatagct |
320 |
Q |
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| T |
29316981 |
cctggaggatcacaaaacaagcccaactaaagcatcctatagtgatcaacacagatccaagtattgtatgatgagcacttgtgccactgctatgatagct |
29317080 |
T |
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| Q |
321 |
ttggctatgatctccaaatgtctcaaaaagtattggacctttcatcaatgtcatcaccattgcacctgaaacagttgctatagttcccaacacctttgct |
420 |
Q |
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| T |
29317081 |
ttggctatgatctccaaatgtctcaaaaagtattggacctttcatcagtgtcatcaccattgcacctgaaacagttgctatagttcccaacacctttgct |
29317180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 29316786 - 29316857
Alignment:
| Q |
19 |
gaaagtgagagtgctgctgggtaggtttcaagggtaatagcctaggaaaagatacaaattaagttgtattagtagc |
94 |
Q |
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| T |
29316786 |
gaaagtgagagtgctgctgggtaggtttcaagggtaatagcctaggaaaagataca----aagttgtattagtagc |
29316857 |
T |
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