View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15326_high_6 (Length: 408)

Name: NF15326_high_6
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15326_high_6
NF15326_high_6
[»] chr5 (3 HSPs)
chr5 (241-390)||(6419637-6419786)
chr5 (10-193)||(6419396-6419586)
chr5 (152-192)||(43007762-43007802)
[»] chr2 (2 HSPs)
chr2 (99-192)||(24026708-24026801)
chr2 (152-192)||(14902316-14902356)
[»] chr7 (5 HSPs)
chr7 (102-192)||(20246659-20246749)
chr7 (100-197)||(6391654-6391749)
chr7 (151-192)||(26772622-26772663)
chr7 (99-192)||(37808026-37808119)
chr7 (152-192)||(30275327-30275367)
[»] chr4 (5 HSPs)
chr4 (98-192)||(41668850-41668944)
chr4 (151-192)||(7372650-7372691)
chr4 (150-191)||(21124579-21124620)
chr4 (150-191)||(21144669-21144710)
chr4 (152-184)||(53423277-53423309)
[»] chr3 (4 HSPs)
chr3 (102-191)||(1543202-1543291)
chr3 (152-192)||(43790658-43790698)
chr3 (130-192)||(24481334-24481396)
chr3 (152-192)||(9107110-9107150)
[»] chr8 (3 HSPs)
chr8 (156-192)||(2296681-2296717)
chr8 (152-192)||(9315445-9315485)
chr8 (152-188)||(32236988-32237024)
[»] chr1 (2 HSPs)
chr1 (106-186)||(5450636-5450716)
chr1 (152-192)||(6587114-6587154)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 241 - 390
Target Start/End: Original strand, 6419637 - 6419786
Alignment:
Q  241 tattgcatgaccattgcaaaagcacgggtataatgctagtttattgtaaaatttggattcaaaatcacattagaattaagttaaaattgaaccctggatc 340  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6419637 tattgcatgaccattgcaaaagcacgggtattatgctagtttattgtaaaatttggattcaaaatcacattagaattaagttaaaattaaaccctggatc 6419736  T
Q  341 acgtggtgactgctagtctagtactaactttgatcaatcaatgtcgccag 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6419737 acgtggtgactgctagtctagtactaactttgatcaatcaatgtcgccag 6419786  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 6419396 - 6419586
Alignment:
Q  10 ataatacttcactgtttcctaattatgtcacgtgaataattcacatgcaatagccgatatgtatttaggaacggatcctgcatcg-------tactcagg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| | ||||||| ||       ||   |      
T  6419396 ataatacttcactgtttcctaattatgtcacgtgaataattcacatgcaatagcggatatgtatttaaaaacaggtcctgcaacgccgcaactaaatata 6419495  T
Q  103 gccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaat 193  Q
       |||||| |||||||| | |  ||||  ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  6419496 atagtttttaagattttggtggcttaaaatgaacctacaaattaagctttaactaataaatatatataaacatcaaacttgatataaaaat 6419586  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 43007802 - 43007762
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||| |||||||||||||||| ||||||| |||||    
T  43007802 taactaataattatatataaacatcaagtttgatacaaaaa 43007762  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 24026801 - 24026708
Alignment:
Q  99 cagggccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||| ||||||||||||| | |||||  ||||||||| || ||||   ||||||||||||||||||||||||| ||||||||||||||||    
T  24026801 cagggccgattttgagattttggtggtctagggcgaacctacaatttagatcttaactaataaatatatataaacattaaatttgatataaaaa 24026708  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 14902316 - 14902356
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  14902316 taactaataaatatatataaacatcaaatttgatacaaaaa 14902356  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 20246659 - 20246749
Alignment:
Q  102 ggccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||| |||||||||| | | |||  | |||||||||| |||||   ||||||||||| |||||||||||||||||||||||||||||    
T  20246659 ggccgtttatgagattttggtggcctatggtgaacctataatttaggtcataactaataaacatatataaacatcaaatttgatataaaaa 20246749  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 6391749 - 6391654
Alignment:
Q  100 agggccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaatttaa 197  Q
    |||||||||||||| |||||||| |  |||||| ||||||||| || |  | |||||||||||||  |||||||||||||||| ||||||||| ||||    
T  6391749 agggccgtttttgaaattttgatggcataaagcaaacctataattttgattataactaataaata--tataaacatcaaatttaatataaaaaattaa 6391654  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 26772622 - 26772663
Alignment:
Q  151 ttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  26772622 ttaactaataaatatatataaacatcaaattttatataaaaa 26772663  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 37808026 - 37808119
Alignment:
Q  99 cagggccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    ||||||||||| |||||||||| | || ||  |||| ||||||| |||||   |||||||||||||||||||||||| ||| || |||||||||    
T  37808026 cagggccgtttatgagattttggtggtttagggcgagcctataatttaggtcctaactaataaatatatataaacataaaacttcatataaaaa 37808119  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 30275327 - 30275367
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  30275327 taactaataaatatatataaacatcaaacttgatacaaaaa 30275367  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 41668850 - 41668944
Alignment:
Q  98 tcagggccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||| ||| |||||||||| | | |||  |||||||||||| || ||   |||||||||||||||||||||||||||| |||||| |||||    
T  41668850 tcagggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaacatcaaacttgatacaaaaa 41668944  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 7372691 - 7372650
Alignment:
Q  151 ttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  7372691 ttaactaataaatatatataaacatcaaatttgatacaaaaa 7372650  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 21124620 - 21124579
Alignment:
Q  150 tttaactaataaatatatataaacatcaaatttgatataaaa 191  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  21124620 tttaactaataaatatatataaacatcaaacttgatataaaa 21124579  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 21144710 - 21144669
Alignment:
Q  150 tttaactaataaatatatataaacatcaaatttgatataaaa 191  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  21144710 tttaactaataaatatatataaacatcaaacttgatataaaa 21144669  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 53423309 - 53423277
Alignment:
Q  152 taactaataaatatatataaacatcaaatttga 184  Q
    |||||||||||||||||||||||||||||||||    
T  53423309 taactaataaatatatataaacatcaaatttga 53423277  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 1543202 - 1543291
Alignment:
Q  102 ggccgtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaa 191  Q
    |||||||| |||||||||||| |||||||||||||||| || ||      ||||||||||||||||| |||||| |||||||||| ||||    
T  1543202 ggccgtttatgagattttgatggtctaaagcgaacctacaatttgaatcctaactaataaatatataaaaacattaaatttgataaaaaa 1543291  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 43790698 - 43790658
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  43790698 taactaataaatatatataaacatcaaatttgatacaaaaa 43790658  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 24481334 - 24481396
Alignment:
Q  130 agcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||| || |||| || |||||| ||||||||||||||||||||| |||||| |||||    
T  24481334 agcgaacctacaatttagactctaactagtaaatatatataaacatcaaacttgataaaaaaa 24481396  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 9107110 - 9107150
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  9107110 taactaataaatatatataaacatcaaattcgatacaaaaa 9107150  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 2296717 - 2296681
Alignment:
Q  156 taataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||||||||||||||||||||||||||||    
T  2296717 taataaatatatataaacatcaaatttgatataaaaa 2296681  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 9315445 - 9315485
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  9315445 taactaataaatatatataaacattaaatttgatacaaaaa 9315485  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 32237024 - 32236988
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatata 188  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32237024 taactaataaatatatataaacatcaaacttgatata 32236988  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 5450636 - 5450716
Alignment:
Q  106 gtttttgagattttgatagtctaaagcgaacctataaattaggctttaactaataaatatatataaacatcaaatttgata 186  Q
    |||| |||||||||||| |||||  ||||| |||||| || |    |||||||||||||||||||||||||||| ||||||    
T  5450636 gtttatgagattttgatggtctatcgcgaatctataatttggatcataactaataaatatatataaacatcaaacttgata 5450716  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 6587154 - 6587114
Alignment:
Q  152 taactaataaatatatataaacatcaaatttgatataaaaa 192  Q
    |||||||||||| ||||||||||||||| |||||| |||||    
T  6587154 taactaataaatctatataaacatcaaacttgataaaaaaa 6587114  T

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