View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15326_low_1 (Length: 868)
Name: NF15326_low_1
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 15 - 630
Target Start/End: Complemental strand, 16801902 - 16801289
Alignment:
| Q |
15 |
atgatcatgaaaataacataacagaacgctacaaaatagtttggaacctataattcaacccattgtcaatccgacaagaagtattcaccataatgcttag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801902 |
atgatcatgaaaataacataacagaacgctacaaaatagtttggaacctataattcaacccattgtcaatccgacaagaagtattcaccataatgcttag |
16801803 |
T |
|
| Q |
115 |
aaaaattgtgtttttcacttctcaaaacagatgataaaacatgataagcaaccagcttgttttttcttctttcagattactctaattttgagaaattgaa |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801802 |
aaaaattgtgttttgcacttctcaaaacagatgataaaacatgataagcaaccagcttgttttttcttctttcagattactctaattttgagaaattgaa |
16801703 |
T |
|
| Q |
215 |
cccactgttgcaaatctgattgaatgatatcccaaacaaagctttataatatttgctacttcattgatacttgacaaatctctaattcgaagccctattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801702 |
cccactgttgcaaatctgattgaatgatatcccaaacaaagctttataatatttgctacttcattgatacttgacaaatctctaattcgaagccctattt |
16801603 |
T |
|
| Q |
315 |
ctatgactaatccagatgaatttctcaaccacatttccatatctttaagtaagcttactggccaagagtagatggaaatataatgaagaatcatattttg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801602 |
ctatgactaatccagatgaatttctcaaccacatttccatatctttaagtaagcttactggccaagagtagatggaaatataatgaagaatcatattttg |
16801503 |
T |
|
| Q |
415 |
aactacagtcttgattaacggcactctaccaacaatagcaaggatataatcttttcaagttacgagtttgattttgactttattagcaattggttgcaaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801502 |
aactacagtcttgattaacggcactctaccaacaatagcaaggatataatcttttcaagttacgagtttgattttgactttattagcaattggttgcaaa |
16801403 |
T |
|
| Q |
515 |
tatgcatattttgggttgcctttcaaaatcgagactctnnnnnnnggtttgcaactcgaaagtttacctcgactcattttatttatctacactcgaatcg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801402 |
tatgcatattttgggttgcctttcaaaatcgagactctaaaaaa--gtttgcaactcgaaagtgtacctcgactcattttatttatctacactcgaatcg |
16801305 |
T |
|
| Q |
615 |
tgaactcgtacaagtg |
630 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16801304 |
tgaactcgtacaagtg |
16801289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 695 - 854
Target Start/End: Complemental strand, 16801224 - 16801065
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaagttatggtcaacttaacaacaaaatataaaa |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
16801224 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaaattatggtcaacttaacaacaaaatacaaaa |
16801125 |
T |
|
| Q |
795 |
ttaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataat |
854 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16801124 |
ttaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataat |
16801065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 695 - 801
Target Start/End: Complemental strand, 31914018 - 31913910
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa |
792 |
Q |
| |
|
||||||| ||||||| ||| |||||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||| | |||||| || ||||||| || |
|
|
| T |
31914018 |
gcaaataagtcaatagtgcaaaatatgacttaattataaagacaaagtatacataaccaccataataaagagttatgtttaacttagcatcaaaatacaa |
31913919 |
T |
|
| Q |
793 |
aattaactt |
801 |
Q |
| |
|
||||||||| |
|
|
| T |
31913918 |
aattaactt |
31913910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 697 - 801
Target Start/End: Original strand, 31561447 - 31561553
Alignment:
| Q |
697 |
aaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataaaa |
794 |
Q |
| |
|
||||||||||||| | | |||||||| ||||||||||| |||||||||||| || |||| ||||| |||| | ||||||||||| |||| || |||| |
|
|
| T |
31561447 |
aaataggtcaataatacaaaatatgacttaattataaagacaaagtatacataactaccataataaagagttgtcttcaacttaacatcaaattacaaaa |
31561546 |
T |
|
| Q |
795 |
ttaactt |
801 |
Q |
| |
|
||||||| |
|
|
| T |
31561547 |
ttaactt |
31561553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 801
Target Start/End: Complemental strand, 36180145 - 36180038
Alignment:
| Q |
697 |
aaataggtcaatattgcgaaatatgatttaattat-aaatgcaaagtatacatgaccaccaaaataaa--gttatggtcaacttaacaacaaaatataaa |
793 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||| ||| ||||||||||| ||| ||| | |||||| |||||| |||||||| || ||| ||| ||| |
|
|
| T |
36180145 |
aaatatgtcaatagtgcaaaatatgacttaattataaaaggcaaagtatacctgatcactataataaagcgttatgctcaacttagcatcaagatacaaa |
36180046 |
T |
|
| Q |
794 |
attaactt |
801 |
Q |
| |
|
|||||||| |
|
|
| T |
36180045 |
attaactt |
36180038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 765
Target Start/End: Original strand, 4840959 - 4841028
Alignment:
| Q |
697 |
aaataggtcaatattgcgaaatatgatttaattat-aaatgcaaagtatacatgaccaccaaaataaagt |
765 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||| ||| ||||||||||||| || || | |||||||| |
|
|
| T |
4840959 |
aaataggtcaatagtgcaaaatatgacttaattataaaaggcaaagtatacataactacaataataaagt |
4841028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 698 - 801
Target Start/End: Original strand, 1253984 - 1254089
Alignment:
| Q |
698 |
aataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataaaat |
795 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||| |||||||||||| ||||||| | ||| ||||||| |||||||| || |||||||||||| |
|
|
| T |
1253984 |
aataggtcaatagtgcaaaatatgacttaattataaagacaaagtatacataaccaccatattaaagagttatgttcaacttagcacaaaaatataaaat |
1254083 |
T |
|
| Q |
796 |
taactt |
801 |
Q |
| |
|
||||| |
|
|
| T |
1254084 |
gaactt |
1254089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 622
Target Start/End: Original strand, 37391899 - 37391955
Alignment:
| Q |
566 |
caactcgaaagtttacctcgactcattttatttatctacactcgaatcgtgaactcg |
622 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
37391899 |
caactcgagagtttacctcaactcattttatttatgtaaactcgaatcgtaaactcg |
37391955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 801
Target Start/End: Complemental strand, 6269076 - 6268969
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa |
792 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||||||||||| ||| |||||| | |||| || ||||| |||||| |||||||| || ||||||| || |
|
|
| T |
6269076 |
gcaaataggtcaatagtgcaaaatatgacttaattataaagacaatgtatac-taaccatcataataaatagttattttcaacttagcatcaaaatacaa |
6268978 |
T |
|
| Q |
793 |
aattaactt |
801 |
Q |
| |
|
||||||||| |
|
|
| T |
6268977 |
aattaactt |
6268969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 697 - 800
Target Start/End: Original strand, 37654850 - 37654955
Alignment:
| Q |
697 |
aaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaa--gttatggtcaacttaacaacaaaatataaaa |
794 |
Q |
| |
|
|||||| |||||| | | |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
37654850 |
aaatagttcaatagtacaaaatatgacttaattataaatgcaaagtataccaaaccaccattataaaatattatgctcaacttaacatcaaaatacaaaa |
37654949 |
T |
|
| Q |
795 |
ttaact |
800 |
Q |
| |
|
|||||| |
|
|
| T |
37654950 |
ttaact |
37654955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 801
Target Start/End: Complemental strand, 28546330 - 28546222
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa |
792 |
Q |
| |
|
||||||||||||||| || |||||||| |||||| |||| ||||| |||||| |||||| ||||| ||||||| |||||||| || ||||||| || |
|
|
| T |
28546330 |
gcaaataggtcaataatgtaaaatatgacttaattctaaaggcaaaacatacataaccaccttaataaagagttatgttcaacttagcatcaaaatacaa |
28546231 |
T |
|
| Q |
793 |
aattaactt |
801 |
Q |
| |
|
||||||||| |
|
|
| T |
28546230 |
aattaactt |
28546222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 801
Target Start/End: Original strand, 37810365 - 37810469
Alignment:
| Q |
699 |
ataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaag--ttatggtcaacttaacaacaaaatataaaatt |
796 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||| |||||||| ||| || ||||||| ||| | ||||||||||| ||||||| |||||| |
|
|
| T |
37810365 |
ataggtcaatattgtaaaatatgacttaattataaagacaacgtatacataacccccgtaataaagaattacgttcaacttaacatcaaaatacaaaatt |
37810464 |
T |
|
| Q |
797 |
aactt |
801 |
Q |
| |
|
||||| |
|
|
| T |
37810465 |
aactt |
37810469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 801
Target Start/End: Original strand, 4870637 - 4870725
Alignment:
| Q |
715 |
aaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataaaattaactt |
801 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||| ||||| ||| ||| |||| |||||| ||||||| ||||||||||| |
|
|
| T |
4870637 |
aaatatgacataattataaagacaaagtatacataaccaccataataaagagtaatgttcaatttaacatcaaaatagaaaattaactt |
4870725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 33177340 - 33177445
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaagttatggtcaacttaacaacaaaatataaaa |
794 |
Q |
| |
|
|||||||||||||| | | ||||| || ||||||||||| |||| ||||||| || |||| || | ||||||| |||||||| || ||||||| |||| |
|
|
| T |
33177340 |
gcaaataggtcaatgatacaaaataagacttaattataaagacaaaatatacataactaccataa-agagttatgttcaacttagcatcaaaatacaaaa |
33177438 |
T |
|
| Q |
795 |
ttaactt |
801 |
Q |
| |
|
||||||| |
|
|
| T |
33177439 |
ttaactt |
33177445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 40317131 - 40317238
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa |
792 |
Q |
| |
|
||||||||||||||| ||| |||||| | ||||||||||| ||||| |||||| ||||| | ||||| ||||||| |||||||| | ||||||| || |
|
|
| T |
40317131 |
gcaaataggtcaatagtgcaaaatataacttaattataaa-acaaagcatacataaccactataataaatagttatgttcaacttagaatcaaaatacaa |
40317229 |
T |
|
| Q |
793 |
aattaactt |
801 |
Q |
| |
|
||||||||| |
|
|
| T |
40317230 |
aattaactt |
40317238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 40327205 - 40327312
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa |
792 |
Q |
| |
|
||||||||||||||| ||| |||||| | ||||||||||| ||||| |||||| ||||| | ||||| ||||||| |||||||| | ||||||| || |
|
|
| T |
40327205 |
gcaaataggtcaatagtgcaaaatataacttaattataaa-acaaagcatacataaccactataataaatagttatgttcaacttagaatcaaaatacaa |
40327303 |
T |
|
| Q |
793 |
aattaactt |
801 |
Q |
| |
|
||||||||| |
|
|
| T |
40327304 |
aattaactt |
40327312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 746
Target Start/End: Original strand, 2292726 - 2292775
Alignment:
| Q |
697 |
aaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatac |
746 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||||| ||||| |
|
|
| T |
2292726 |
aaataggtcaatattgcaaaatatgacttaattacaaatgcaaactatac |
2292775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 695 - 778
Target Start/End: Original strand, 21010384 - 21010469
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaactta |
778 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||| |||||||||||| || |||| ||||| ||||||| |||||||| |
|
|
| T |
21010384 |
gcaaatagatcaatagtgcaaaatatgacttaattataatgacaaagtatacataactaccataataaagagttatgttcaactta |
21010469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 562 - 624
Target Start/End: Complemental strand, 43173676 - 43173614
Alignment:
| Q |
562 |
tttgcaactcgaaagtttacctcgactcattttatttatctacactcgaatcgtgaactcgta |
624 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||||| || |||||| ||| ||||||||| |
|
|
| T |
43173676 |
tttgcaactcgagagtttacctcaactcgttttatttaggtaaactcgactcgagaactcgta |
43173614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 764
Target Start/End: Original strand, 9030557 - 9030626
Alignment:
| Q |
695 |
gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaag |
764 |
Q |
| |
|
||||||| ||||||| | | |||||||| ||||||| ||| |||||||||||| ||||||| ||||||| |
|
|
| T |
9030557 |
gcaaatatgtcaataattcaaaatatgacttaattacaaagacaaagtatacataaccaccataataaag |
9030626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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