View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15326_low_12 (Length: 269)
Name: NF15326_low_12
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 41752648 - 41752899
Alignment:
| Q |
1 |
caaactcaagtggtgatgatgttacaacaaaaactatggagaaggctcaacttgttgtggctgctgctgttgattttcataacaaagaagtcaaagctat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41752648 |
caaacccaagtggtgatgatgttacaacaaaaactatggagaaggctcaagttgttgtggctgctgctgttgattttcataacaaagaagtcaaagctat |
41752747 |
T |
|
| Q |
101 |
ctctgatgattctcttttcaatctatcttctacacctccactttctattcaggcaatacctcaactattggtaagggagtaatgttttttctatctttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41752748 |
ctctgatgattctcttttcaatctatcttctacacctccactttctattcaggcaatccctcaaatattggtaagggagtaatgttttttctatctttaa |
41752847 |
T |
|
| Q |
201 |
gtttggattttcctattnnnnnnnntttaattttacaggtggaatattaatta |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41752848 |
gtttggattttcctattaaaaaaaa-ttaattttacaggtggaatattaatta |
41752899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University