View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15326_low_13 (Length: 255)
Name: NF15326_low_13
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 56069559 - 56069300
Alignment:
| Q |
1 |
ttgggtcttggctacaaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactata----atggaaatatgaaaccatggatcgaga |
96 |
Q |
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| T |
56069559 |
ttgggtcttggctacaaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactatatataatggaaatatgaaaccatggctcgaga |
56069460 |
T |
|
| Q |
97 |
taagtattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgagaatgcaacatccatccataataaaggtcaa---- |
192 |
Q |
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| T |
56069459 |
taagtattcaaaagtttcaaggttattggacgaagtacattcattatgattctgtgtatttgcgagaatgcaacatccatccataataaaggtcaatgca |
56069360 |
T |
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| Q |
193 |
---------ttgcaatccattatataatttattattctttttgtatacatggcttgcttc |
243 |
Q |
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| T |
56069359 |
ccttataggttgcaatccattatataatttattattctttttgtatacatggcttgcttc |
56069300 |
T |
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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 38398783 - 38398961
Alignment:
| Q |
4 |
ggtcttggctacaaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtat |
103 |
Q |
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| T |
38398783 |
ggtcttggctacaaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcac--tataacggaaacttgaaaccgtggctggagataagtat |
38398880 |
T |
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| Q |
104 |
tcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgagaatgcaacatccatccataata |
184 |
Q |
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| T |
38398881 |
accgaagtttaaaggttattggacgaagtatgttgattatgagagtgagtatttgcgagaatgcaatatcaatcaataata |
38398961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 10171091 - 10171266
Alignment:
| Q |
1 |
ttgggtcttggctacaaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataag |
100 |
Q |
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||||||||||||||||| || | ||||||||||||||||| || | |||||||| || ||||| ||||| || ||||| |||||| | |||||||| |
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| T |
10171091 |
ttgggtcttggctacaatcccaacgtcaaccaaaaagatattgatcgggctgctgt--tatgcactacaatgggaacatgaagccatggttggagataag |
10171188 |
T |
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| Q |
101 |
tattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgagaatgcaacatccatcc |
178 |
Q |
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| T |
10171189 |
tattcccaagtttagaggttactggacaaagtatgtcaactataatcatgtctatttgcgagaatgcaacatcaatcc |
10171266 |
T |
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