View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15326_low_17 (Length: 228)
Name: NF15326_low_17
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_low_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35977474 - 35977698
Alignment:
| Q |
1 |
attattttctgaaaagaagacaagaatacacaaaacaccaaaatagtcttcaagataaaccagaccacatggcttactcaacactatactcctgcttagt |
100 |
Q |
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| T |
35977474 |
attattttctcaaaagaagacaagaatacacaaaacaccaaaatagtcttcaagatgaaccagaccacatggcttactcaacactatactcctgcttggt |
35977573 |
T |
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| Q |
101 |
aggaactgtctatttttcatgacccttcttctgtccttcactacaattgcatttctctacatgcaaccgttcatcatgtactactaacattcacatggtt |
200 |
Q |
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| T |
35977574 |
aggaactgtctatttttcatgacc---cttctctccttcactacaattgcatttctctacatgcaaccgttcatcatgtactactaacattcacatggtt |
35977670 |
T |
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| Q |
201 |
aatattgttagtttcacatggttcctca |
228 |
Q |
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| T |
35977671 |
aatattgttagtttcacatggttcctca |
35977698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 35954775 - 35954954
Alignment:
| Q |
15 |
agaagacaagaatacacaaaacaccaaaatagtcttcaagataaaccagaccacatggcttactcaacactatactcctgcttagtaggaactgtctatt |
114 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| | |||||||||| |||| |
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| T |
35954775 |
agaaaacaaaaatacacaaaacaccaaaatagtcttcaagattgaccagaccacatggctt-----acactattctcctggt---taggaactgtatatt |
35954866 |
T |
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| Q |
115 |
ttt-catgacccttcttctgtccttcactacaattgcatttctctacatgcaaccgt---tcatcatgtactactaacattcacatggtta |
201 |
Q |
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| T |
35954867 |
tttccatgacc---cttctctccttcacacccaatgtatttatctgcatgcaaccgtttattatcatgtactactaatattcacatggtta |
35954954 |
T |
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