View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15326_low_2 (Length: 720)

Name: NF15326_low_2
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15326_low_2
NF15326_low_2
[»] chr2 (7 HSPs)
chr2 (10-535)||(43412682-43413210)
chr2 (638-704)||(43413284-43413350)
chr2 (549-606)||(43399272-43399329)
chr2 (115-197)||(929010-929092)
chr2 (640-679)||(43399370-43399409)
chr2 (131-253)||(34504177-34504300)
chr2 (579-613)||(43413220-43413254)
[»] chr7 (5 HSPs)
chr7 (115-197)||(32854239-32854321)
chr7 (131-194)||(48723328-48723391)
chr7 (133-197)||(29724368-29724432)
chr7 (140-253)||(42121329-42121442)
chr7 (115-197)||(33645263-33645349)
[»] chr3 (7 HSPs)
chr3 (130-253)||(48855510-48855633)
chr3 (114-253)||(53683921-53684061)
chr3 (131-197)||(54362031-54362097)
chr3 (134-253)||(37311647-37311766)
chr3 (132-184)||(32737826-32737878)
chr3 (211-254)||(53436172-53436215)
chr3 (155-197)||(34408058-34408100)
[»] chr5 (5 HSPs)
chr5 (139-252)||(141319-141432)
chr5 (133-197)||(6818578-6818642)
chr5 (207-253)||(12289080-12289126)
chr5 (131-197)||(29429610-29429676)
chr5 (111-185)||(6809624-6809698)
[»] chr1 (2 HSPs)
chr1 (112-195)||(31820642-31820724)
chr1 (132-197)||(3150653-3150718)
[»] chr4 (4 HSPs)
chr4 (115-253)||(3527864-3528003)
chr4 (131-197)||(50685593-50685659)
chr4 (132-253)||(8488651-8488772)
chr4 (112-197)||(13901996-13902080)
[»] chr6 (2 HSPs)
chr6 (131-196)||(7509734-7509799)
chr6 (207-253)||(5456575-5456621)
[»] chr8 (1 HSPs)
chr8 (134-188)||(12883128-12883182)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 10 - 535
Target Start/End: Original strand, 43412682 - 43413210
Alignment:
Q  10 agattatactatgttagagcaacttagaatgggggaaaaccaaatctagtgttcctcacatatgcgagcgaatatataagcgagaaaatattattttgta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43412682 agattatactatgttagagcaacttagaatgggggaaaaccaaatctagtgttcctcacatatgcgagcgaatatataagtgagaaaatattattttgta 43412781  T
Q  110 ttggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaa---tcaatgcattagaatttaannnnnnnca 206  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| || ||   ||||| |||||||||||||       ||    
T  43412782 ttggaaaatgctaacgtgtgcccttaaggcacaagttaattagttaaaagtggaaataatttgctcaaaaaatcaatacattagaatttaatttttttca 43412881  T
Q  207 ttttgattaacttaatacacaaaatttaagagaatatttctacttttatttttagattgtttaatatatggcttaaaacataagttagcaaaaccccttt 306  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||    
T  43412882 ttttgattaatttaatacacaaaatttaagagaatgtttctacttttatttttagattgtttaacatatgccttaaaacataagttagcaagaccc-ttt 43412980  T
Q  307 tatatttgattattatagtaaatctctccttgtgagggg-ctaagttgagaagtaaattggttgctatcccttttatgaagatattttagaaactaattt 405  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43412981 tatatttgattattatagtaaatctctccttgtgagggggctaagttgagaagtaaattggttgctatcccttttatgaagatattttagaaactaattt 43413080  T
Q  406 taaagattcaccttataaattgacggttacacgtgtaaaataacactccgtacatcaatttctaacttcaatcatcatacatgttggatattgcatgcac 505  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43413081 taaagagtcgccttataaattgacggttacacgtgtaaaataacactccgtacatcaatttctaacttcaatcatcatacatgttggatattgcatgcac 43413180  T
Q  506 tacgtgttttaagtaatgtttatgtttcat 535  Q
    ||||||||||||||||||||||||||||||    
T  43413181 tacgtgttttaagtaatgtttatgtttcat 43413210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 638 - 704
Target Start/End: Original strand, 43413284 - 43413350
Alignment:
Q  638 ctatatatttttcttttaatcaattctagaactagaatgaatactgatactaatactctctacaaac 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43413284 ctatatatttttcttttaatcaattctagaactagaatgaatactaatactaatactctctacaaac 43413350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 606
Target Start/End: Original strand, 43399272 - 43399329
Alignment:
Q  549 ggtttatggctcgaagaatttactagtaataaaaagttgagaatgttgttgattccat 606  Q
    ||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||||    
T  43399272 ggtttatggctggaggaacttactagtaatgaaaagttgagaatgttgttgattccat 43399329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 929010 - 929092
Alignment:
Q  115 aaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    ||||| |||| ||| |||||||| ||||||||||  ||| |||||| |||||| |||||| ||||||||||||| ||||||||    
T  929010 aaatgttaacttgtgtccttaagacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatttaa 929092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 43399370 - 43399409
Alignment:
Q  640 atatatttttcttttaatcaattctagaactagaatgaat 679  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  43399370 atatatttttcttttcatcaattctagaaccagaatgaat 43399409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 34504177 - 34504300
Alignment:
Q  131 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnnca-ttttgattaacttaatacacaaa 229  Q
    ||||||| ||||||||||| | | |||||| ||||||| |||||  |||||||||||| |||||||         | |||| ||||| | ||| ||||||    
T  34504177 ccttaagacacaagttaatgaatcaaaagtagaaataagttgttgcaatcaatgcatttgaatttagttttttttacttttaattaattgaatgcacaaa 34504276  T
Q  230 atttaagagaatatttctactttt 253  Q
    |||||||||||||||| |||||||    
T  34504277 atttaagagaatatttttactttt 34504300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 613
Target Start/End: Original strand, 43413220 - 43413254
Alignment:
Q  579 aaaaagttgagaatgttgttgattccattcatgat 613  Q
    |||||||||||||||||||||||||||| ||||||    
T  43413220 aaaaagttgagaatgttgttgattccatccatgat 43413254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 32854239 - 32854321
Alignment:
Q  115 aaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||||||||| |||  ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32854239 aaatgctaacctgtgcccttaaaacacaagttaatgagttaaaagtggaaataatttgttctaatcaatgcatttgaaattaa 32854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 48723391 - 48723328
Alignment:
Q  131 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatt 194  Q
    ||||||||||||||||||| |||| |||||||||||| |||||| |||| |||||||| |||||    
T  48723391 ccttaaggcacaagttaatgagtttaaagtggaaatattttgttgtaatgaatgcatttgaatt 48723328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 29724432 - 29724368
Alignment:
Q  133 ttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||||| |||||| ||| ||| |||||| ||||||||||||| |||| |||||||| ||||||||    
T  29724432 ttaaggtacaagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatttaa 29724368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 253
Target Start/End: Original strand, 42121329 - 42121442
Alignment:
Q  140 acaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaatttaagaga 239  Q
    |||||||||| |||||||| |  |||||||||||| |||| |||||||| ||||||||         |||| ||||| | |||  |||||||||||||||    
T  42121329 acaagttaatgagttaaaaatataaataatttgttgtaattaatgcatttgaatttaattttttcacttttcattaattgaatgtacaaaatttaagaga 42121428  T
Q  240 atatttctactttt 253  Q
    || |||||||||||    
T  42121429 atgtttctactttt 42121442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 33645349 - 33645263
Alignment:
Q  115 aaatgctaacgtgtatccttaaggcacaagttaatt-----agttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||||||||| |||  |||||||||||||||||||      ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  33645349 aaatgctaacttgtgcccttaaggcacaagttaatgtaatgagtcaaaagtggaaataatttgttgtaa-caatgcatttgaatttaa 33645263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 48855633 - 48855510
Alignment:
Q  130 tccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaa 229  Q
    |||||||||||||||||||| || ||||||||||||||| ||||| |||| ||| |||| ||||||||         ||| |||||| | ||||||||||    
T  48855633 tccttaaggcacaagttaatgagctaaaagtggaaataaattgttgtaattaattcatttgaatttaattctttaattttagattaattgaatacacaaa 48855534  T
Q  230 atttaagagaatatttctactttt 253  Q
    ||| ||||||||||||||||||||    
T  48855533 attcaagagaatatttctactttt 48855510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 53683921 - 53684061
Alignment:
Q  114 aaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa-nnnnnnncattttga 212  Q
    |||||| |||| |||  ||||||||||||||||||| ||  ||||||| |||||||||||| |||| |||| ||| ||||||||        | ||||||    
T  53683921 aaaatgttaacttgtgcccttaaggcacaagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatttaattttttgactttttga 53684020  T
Q  213 ttaacttaatacacaaaatttaagagaatatttctactttt 253  Q
    |||| | |||||||||||| |||||||||||||||||||||    
T  53684021 ttaattgaatacacaaaatataagagaatatttctactttt 53684061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 54362031 - 54362097
Alignment:
Q  131 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    ||||||||||||||||||| ||| |||||| |||||| || ||| ||||||||||||| ||||||||    
T  54362031 ccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaa 54362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 37311647 - 37311766
Alignment:
Q  134 taaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaattt 233  Q
    |||||||||||||||| ||  ||||||  |||||||||||| |||| |||||||| ||||||||         |||||||||| | ||| ||||||||      
T  37311647 taaggcacaagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatttaattttttgacttttgattaattgaatgcacaaaatac 37311746  T
Q  234 aagagaatatttctactttt 253  Q
    |||||||| |||||||||||    
T  37311747 aagagaatgtttctactttt 37311766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 32737878 - 32737826
Alignment:
Q  132 cttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatg 184  Q
    |||||||||||||||||| ||| |||| || |||||||||||| |||||||||    
T  32737878 cttaaggcacaagttaatgagtcaaaaatgaaaataatttgttgtaatcaatg 32737826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 53436215 - 53436172
Alignment:
Q  211 gattaacttaatacacaaaatttaagagaatatttctactttta 254  Q
    |||||| | |||||||||||||||||| ||||||||||||||||    
T  53436215 gattaattaaatacacaaaatttaagaaaatatttctactttta 53436172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 34408058 - 34408100
Alignment:
Q  155 aaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  34408058 aaaagtggaaataatttgttgtaatcaatgcatttaaatttaa 34408100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 141319 - 141432
Alignment:
Q  139 cacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaatttaagag 238  Q
    ||||||||||| || ||||||||||||||| ||||| |||| |||||||| ||||||||         |||||||||| | ||| ||||||||| |||||    
T  141319 cacaagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatttaattctttaacttttgattaattgaatgcacaaaattcaagag 141418  T
Q  239 aatatttctacttt 252  Q
    ||||||||||||||    
T  141419 aatatttctacttt 141432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 6818578 - 6818642
Alignment:
Q  133 ttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||| |||||||||||| |||||||| || |||||||||||| ||||||||| ||| ||||||||    
T  6818578 ttaaagcacaagttaatgagttaaaaatgaaaataatttgttgtaatcaatgtatttgaatttaa 6818642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 12289080 - 12289126
Alignment:
Q  207 ttttgattaacttaatacacaaaatttaagagaatatttctactttt 253  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||    
T  12289080 ttttgattaattgaatacacaaaattcaagagaatatttctactttt 12289126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 29429610 - 29429676
Alignment:
Q  131 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||| |||| ||| |||| ||||||||    
T  29429610 ccttaaggcacaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatttaa 29429676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 6809624 - 6809698
Alignment:
Q  111 tggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgc 185  Q
    ||||||||| |||| ||| || ||||  ||||||||||  ||| |||||||||||||||||||  ||||||||||    
T  6809624 tggaaaatgttaacttgtgtctttaaaacacaagttaaagagtcaaaagtggaaataatttgtcgtaatcaatgc 6809698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 31820724 - 31820642
Alignment:
Q  112 ggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaattt 195  Q
    |||||||| |||| |||  ||||||||| ||||||||| ||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  31820724 ggaaaatgttaacttgtgcccttaaggcgcaagttaataagtcaaaagtggaaataatttgttgtaatcaa-gcatttgaattt 31820642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 3150653 - 3150718
Alignment:
Q  132 cttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||||| ||||||||||  ||| |||||||||||||||||||| |||| ||| |||| ||||||||    
T  3150653 cttaagacacaagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatttaa 3150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 3527864 - 3528003
Alignment:
Q  115 aaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnnca-ttttgat 213  Q
    ||||| |||| ||| |||||||| ||||||| ||| |||  ||||| |||||| |||||| ||||||||||||| ||||||||        | |||||||    
T  3527864 aaatgttaacatgtgtccttaagacacaagtcaataagtccaaagtagaaatattttgttgtaatcaatgcatttgaatttaatttattttatttttgat 3527963  T
Q  214 taacttaatacacaaaatttaagagaatatttctactttt 253  Q
    ||| | ||| |||||||| ||||||||| |||||||||||    
T  3527964 taattgaatgcacaaaatataagagaatgtttctactttt 3528003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 50685593 - 50685659
Alignment:
Q  131 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    ||||||||||||||||||| ||  |||||||||||||||||||| |||| |||| ||| ||||||||    
T  50685593 ccttaaggcacaagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatttaa 50685659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 8488772 - 8488651
Alignment:
Q  132 cttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaannnnnnncattttgattaacttaatacacaaaat 231  Q
    ||||| |||||||||||| || |||||  |||||||||||| | |||| |||||||| ||||||||         |||||||||| | ||||||||||||    
T  8488772 cttaaagcacaagttaatgagctaaaaaaggaaataatttggtgtaattaatgcatttgaatttaattttttgacttttgattaattgaatacacaaaat 8488673  T
Q  232 ttaagagaatatttctactttt 253  Q
      |||||||| |||||||||||    
T  8488672 acaagagaatgtttctactttt 8488651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 13901996 - 13902080
Alignment:
Q  112 ggaaaatgctaacgtgtatccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaatttaa 197  Q
    |||||||| |||| |||| | |||||||| ||| |||| ||| |||||| |||||| || ||| ||||||||||||| ||||||||    
T  13901996 ggaaaatgttaacttgtacctttaaggca-aaggtaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaa 13902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 7509799 - 7509734
Alignment:
Q  131 ccttaaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcattagaattta 196  Q
    ||||||||||||||||||| ||| |||||| |||||| | |||| ||||||||||||| |||||||    
T  7509799 ccttaaggcacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaattta 7509734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 5456621 - 5456575
Alignment:
Q  207 ttttgattaacttaatacacaaaatttaagagaatatttctactttt 253  Q
    |||||||||| | ||||||||||||| ||||||||||||||| ||||    
T  5456621 ttttgattaattgaatacacaaaattcaagagaatatttctattttt 5456575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 12883182 - 12883128
Alignment:
Q  134 taaggcacaagttaattagttaaaagtggaaataatttgttctaatcaatgcatt 188  Q
    |||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||||    
T  12883182 taaggcacaagttaatgagttataagtgaaaataatttgttgtaattaatgcatt 12883128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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