View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15326_low_3 (Length: 612)
Name: NF15326_low_3
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 230 - 561
Target Start/End: Original strand, 49124225 - 49124556
Alignment:
| Q |
230 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124225 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
49124324 |
T |
|
| Q |
330 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagtttagattttctttagttgaaagtacaaaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124325 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaagaaagtttagattttctttagttgaaagtacaaaa |
49124424 |
T |
|
| Q |
430 |
gtgggagagatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaag |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49124425 |
gtgggagagatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgag |
49124524 |
T |
|
| Q |
530 |
ccatgagatggtccttcaacataaaattttgc |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49124525 |
ccatgagatggtccttcaacataaaattttgc |
49124556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 49123942 - 49124171
Alignment:
| Q |
8 |
tgataagaaactttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49123942 |
tgataagaaactttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaa |
49124041 |
T |
|
| Q |
108 |
tatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124042 |
tatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaa |
49124141 |
T |
|
| Q |
208 |
gtgtgttaacatagattttaatattcataa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49124142 |
gtgtgttaacatagattttaatattcataa |
49124171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 7e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 419 - 561
Target Start/End: Original strand, 11683284 - 11683428
Alignment:
| Q |
419 |
aaagtacaaaagtgggaga--gatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgcca |
516 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11683284 |
aaagtacaaaagtgggagagagatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgcca |
11683383 |
T |
|
| Q |
517 |
agtcaatcctaagccatgagatggtccttcaacataaaattttgc |
561 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
11683384 |
agtcaatcctgagccatgagattttccttcaacgtaaaattttgc |
11683428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 18988479 - 18988604
Alignment:
| Q |
417 |
tgaaagtacaaaagtgggagaga--tttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgc |
514 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
18988479 |
tgaaagtacaaaagtgcgagagaggtttgagatgttgaagagaaattctcttaag----ttcaccttgttgtgtcaagagaaatcttaattctcatatgc |
18988574 |
T |
|
| Q |
515 |
caagtcaatcctaagccatgagatggtcct |
544 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
18988575 |
caagtcaatcctgagccatgagatggtcct |
18988604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
| Q |
331 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc |
379 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
11683218 |
tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc |
11683266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 18988416 - 18988485
Alignment:
| Q |
331 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt |
400 |
Q |
| |
|
|||||||||||| |||| | |||||||||| ||||| ||||||| |||| |||||||||| || |||||| |
|
|
| T |
18988416 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt |
18988485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 417 - 544
Target Start/End: Complemental strand, 30341286 - 30341157
Alignment:
| Q |
417 |
tgaaagtacaaaagtgggagaga--tttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgc |
514 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
30341286 |
tgaaagcacaaaagtgggagagaggtttgagatgttgaagagagattctcttaaggaagttcaccttgttgtgtcaagagaaatcttaattctcatatgc |
30341187 |
T |
|
| Q |
515 |
caagtcaatcctaagccatgagatggtcct |
544 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
30341186 |
caagtcaatcctgagccatgagatggtcct |
30341157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 30341349 - 30341281
Alignment:
| Q |
331 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaag |
399 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||| ||||||| |||| |||||||||| || ||||| |
|
|
| T |
30341349 |
tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaag |
30341281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 417 - 544
Target Start/End: Complemental strand, 23917045 - 23916920
Alignment:
| Q |
417 |
tgaaagtacaaaagtgggagaga--tttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgc |
514 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
23917045 |
tgaaagtacaaaagtgcgagagaggtttgagatgttgaagagaaattctcttaag----ttcaccttgttgtgtcaagagaaatcttaattctcatatgc |
23916950 |
T |
|
| Q |
515 |
caagtcaatcctaagccatgagatggtcct |
544 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
23916949 |
caagtcaatcctgagccatgagatggtcct |
23916920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 23917108 - 23917039
Alignment:
| Q |
331 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt |
400 |
Q |
| |
|
|||||||||||| |||| | |||||||||| ||||| ||||||| |||| |||||||||| || |||||| |
|
|
| T |
23917108 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt |
23917039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 4271528 - 4271421
Alignment:
| Q |
71 |
ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||| || |||||||| ||||||| || |
|
|
| T |
4271528 |
ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta |
4271429 |
T |
|
| Q |
171 |
atcctctg |
178 |
Q |
| |
|
| |||||| |
|
|
| T |
4271428 |
aacctctg |
4271421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 4271351 - 4271269
Alignment:
| Q |
465 |
ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatggtccttca |
547 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4271351 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca |
4271269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 2807872 - 2807765
Alignment:
| Q |
71 |
ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||| || |||||||| ||||||| || |
|
|
| T |
2807872 |
ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta |
2807773 |
T |
|
| Q |
171 |
atcctctg |
178 |
Q |
| |
|
| |||||| |
|
|
| T |
2807772 |
aacctctg |
2807765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 2807695 - 2807613
Alignment:
| Q |
465 |
ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatggtccttca |
547 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
2807695 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca |
2807613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University