View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15326_low_5 (Length: 450)
Name: NF15326_low_5
Description: NF15326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15326_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 53453474 - 53453894
Alignment:
| Q |
20 |
cttccgtggcgcggttatcaccaccgcaaatcccttctacacctcatcggagctcgctaaacaagccaccgcaacaaaatctaaactcatcataacacaa |
119 |
Q |
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| T |
53453474 |
cttccgcggcgcggttatcaccaccgcaaatcccttctacacctcatcggagctcgctaaacaagccaccgcaacaaaatctaaactcatcataacacaa |
53453573 |
T |
|
| Q |
120 |
tccgcgtatctcaataaaatcaatgatttcgcaaaactcaacgacatcaaaatcgtgtgcattgattcatcaccggaggaagatgaacatgttgtgaact |
219 |
Q |
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| T |
53453574 |
tccgtatatctcaataaaatcaacgatttcgcaaaactcatcgacatcaaaatcgtgtgcattgattcatcaccggaggaagatgaaaatgttgtggatt |
53453673 |
T |
|
| Q |
220 |
tttctgctttaacaaatgctgatgaaaacgaattaccagaagttaaaataaacccaaacgacgtggttgcgttaccgttttcttcaggaacttctggttt |
319 |
Q |
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| T |
53453674 |
tttctgttttaacaaatgctgatgaaaacgaattaccagaagtaaaaataaacccaaacgatgtagttgcgttaccgttttcttcaggaacttctggttt |
53453773 |
T |
|
| Q |
320 |
accaaaaggtgttatgttaacacatgaaaatttagttacaacaatatcacagttagttgacggtgaaaatccacaccaatacactaactacgaagatgtc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53453774 |
accaaaaggtgttatgttaacacatgaaaatttagttacaacaatatcacagttagttgacggtgaaaatccacaccaatacactaactacgaagatgtc |
53453873 |
T |
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| Q |
420 |
ttactttgtgtgttacctatg |
440 |
Q |
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| T |
53453874 |
ttactttgtgtgttacctatg |
53453894 |
T |
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