View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15327_high_1_N (Length: 695)
Name: NF15327_high_1_N
Description: NF15327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15327_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 56070001 - 56069678
Alignment:
| Q |
23 |
tttggacgattaatttggagggaaacataaacggtgctgttgaaacttgtgcaggaagtttccatcgttttgatggttacctcaacttctcaaatcctct |
122 |
Q |
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| T |
56070001 |
tttggtcgattaatttggagggaaacataaacggtgctgttgaaacttgtgcaggaagtttccatcgttttgatggttacctcaacttctcaaatcctct |
56069902 |
T |
|
| Q |
123 |
tgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaacatcacagaggt |
222 |
Q |
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| T |
56069901 |
tgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaacatcacagaggt |
56069802 |
T |
|
| Q |
223 |
gtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaatttctcgtt |
322 |
Q |
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| T |
56069801 |
gtaccacaaatggcagaaactggtaagcacact----ttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaatttctcgtt |
56069706 |
T |
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| Q |
323 |
tctttccaatttcatcgacgatgtttcc |
350 |
Q |
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| T |
56069705 |
tctttccaatttcatcgacgatttttcc |
56069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 351 - 682
Target Start/End: Complemental strand, 56069644 - 56069300
Alignment:
| Q |
351 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
450 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
56069545 |
T |
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| Q |
451 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacac----tataatggaaatatgaaaccatggatcgagataagtattcaaaagt |
546 |
Q |
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| T |
56069544 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactatatataatggaaatatgaaaccatggctcgagataagtattcaaaagt |
56069445 |
T |
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| Q |
547 |
ttcaaggttattggacgaagtacgttcattatgattctgtgctactccttgcgagaatgcaacatccatccataataaaggtcaa-------------tt |
633 |
Q |
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| T |
56069444 |
ttcaaggttattggacgaagtacattcattatgattctgtg----tatttgcgagaatgcaacatccatccataataaaggtcaatgcaccttataggtt |
56069349 |
T |
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| Q |
634 |
gcaatccattatataatttattattctttttgtatacatggcttgcttc |
682 |
Q |
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| T |
56069348 |
gcaatccattatataatttattattctttttgtatacatggcttgcttc |
56069300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 56070067 - 56070036
Alignment:
| Q |
1 |
caaagctcaagaaagtggtgtttttggacgat |
32 |
Q |
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| T |
56070067 |
caaagctcaagaaagtggtgtttttggacgat |
56070036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 38398329 - 38398594
Alignment:
| Q |
31 |
attaatttggagggaaacataaacggtgctgttgaaacttgtgcaggaagtttccatcgttttgatggttacctcaacttctcaaatcctcttgttgcaa |
130 |
Q |
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|||| |||| |||| |||||||| |||||||| ||||||||| || || |||||||| |||||| ||||||| ||||||||||||||||||||||||| |
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| T |
38398329 |
attactttgaagggtaacataaatggtgctgtcgaaacttgtacaaaaaaattccatcgatttgatagttaccttaacttctcaaatcctcttgttgcaa |
38398428 |
T |
|
| Q |
131 |
agaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaacatcacagaggtgtaccaca |
230 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38398429 |
agaattttgaccctcgtgcttgtggatgggcatatg----gtatgaatgtttttgatttagtcgaatggaagaagcaaaacatcacagaggtgtaccaca |
38398524 |
T |
|
| Q |
231 |
aatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
305 |
Q |
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| T |
38398525 |
attggcagaagctggtaag-acact----ttaatctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 351 - 580
Target Start/End: Original strand, 38398695 - 38398922
Alignment:
| Q |
351 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
450 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
|
| Q |
451 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttca |
550 |
Q |
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| T |
38398795 |
aaccccaatgtcaaccaaaaagatattgaaagggctgctgtaat--tcactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaa |
38398892 |
T |
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| Q |
551 |
aggttattggacgaagtacgttcattatga |
580 |
Q |
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| T |
38398893 |
aggttattggacgaagtatgttgattatga |
38398922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 10170480 - 10170667
Alignment:
| Q |
58 |
gctgttgaaacttgtgcaggaagtttccatcgttttgatggttacctcaacttctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggat |
157 |
Q |
| |
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||||| |||||||||| || |||||||||||| |||||| |||| || |||||||||||||||||| |||||||||||||||| |||| ||||||||| | |
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| T |
10170480 |
gctgtagaaacttgtggagaaagtttccatcgatttgatcgttatctgaacttctcaaatcctcttattgcaaagaattttgatcctcatgcttgtgggt |
10170579 |
T |
|
| Q |
158 |
gggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaacatcacagaggtgtaccacaaatggcagaaactggtaag |
249 |
Q |
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| T |
10170580 |
gggcctacg----gaatgaatgtatttgatttagtccaatggaagaggcaaaagatcacagaggtgtaccacaactggcagaatttggtaag |
10170667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 358 - 568
Target Start/End: Original strand, 10171013 - 10171221
Alignment:
| Q |
358 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctacaaccctg |
457 |
Q |
| |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| | | ||||| || ||||||||||||||||| || |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgttgggtcttggctacaatccca |
10171112 |
T |
|
| Q |
458 |
atgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttat |
557 |
Q |
| |
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| ||||||||||||||||| || | |||||||| || ||||| ||||| || ||||| |||||| | ||||||||||||| |||||| |||||| |
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| T |
10171113 |
acgtcaaccaaaaagatattgatcgggctgctgt--tatgcactacaatgggaacatgaagccatggttggagataagtattcccaagtttagaggttac |
10171210 |
T |
|
| Q |
558 |
tggacgaagta |
568 |
Q |
| |
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||||| ||||| |
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| T |
10171211 |
tggacaaagta |
10171221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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