View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15327_high_3 (Length: 369)
Name: NF15327_high_3
Description: NF15327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15327_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 17075396 - 17075743
Alignment:
| Q |
20 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
119 |
Q |
| |
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|||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||| |
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| T |
17075396 |
catcataatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcgga |
17075495 |
T |
|
| Q |
120 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
219 |
Q |
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|||||||||| ||||||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| |||||||| |
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| T |
17075496 |
agaaagtgaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatc |
17075595 |
T |
|
| Q |
220 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
319 |
Q |
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||||| ||||||||||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||| |
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| T |
17075596 |
taaattgagaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaac |
17075695 |
T |
|
| Q |
320 |
aatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtg |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17075696 |
aatgattgggttaattgggtggcagtgcatggaaatgagaaggttgtg |
17075743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 11053470 - 11053702
Alignment:
| Q |
20 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagagg |
118 |
Q |
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||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || || |
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| T |
11053470 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcgg |
11053568 |
T |
|
| Q |
119 |
aagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaat |
218 |
Q |
| |
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|||||||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||| |
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| T |
11053569 |
aagaaagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaat |
11053668 |
T |
|
| Q |
219 |
ctaaatcgagaaaattacaaggttcggatcgtct |
252 |
Q |
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|||||||||| |||||||||||||| || ||||| |
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| T |
11053669 |
ctaaatcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 11064036 - 11064148
Alignment:
| Q |
248 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgc |
347 |
Q |
| |
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||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
348 |
atgggaatgagaa |
360 |
Q |
| |
|
||| ||||||||| |
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|
| T |
11064136 |
atgagaatgagaa |
11064148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 17684263 - 17683923
Alignment:
| Q |
20 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttat--aaaga- |
116 |
Q |
| |
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||||||||||| | ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| || |||| | | ||| || | ||| | |
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| T |
17684263 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcctattt-----tccaatccgatatttgtgcaaacaa |
17684169 |
T |
|
| Q |
117 |
--ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacatttta |
214 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||| |
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| T |
17684168 |
acggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatctta |
17684069 |
T |
|
| Q |
215 |
aaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcgg |
314 |
Q |
| |
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|||||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||| |
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| T |
17684068 |
aaatctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcgg |
17683969 |
T |
|
| Q |
315 |
ttaacaatgattgggttaattgggtggcagtgcatgggaatgagaa |
360 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17683968 |
ttaataatgattgggttaattgggtggcagtgcatgggaatgagaa |
17683923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
200 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagtt |
299 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| |||| |
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| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
300 |
cctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggt |
363 |
Q |
| |
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| || || | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 113 - 366
Target Start/End: Original strand, 10559739 - 10559992
Alignment:
| Q |
113 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
212 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
213 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
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| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
313 |
ggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgt |
366 |
Q |
| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgt |
10559992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 10558419 - 10558490
Alignment:
| Q |
19 |
acatcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
90 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
10558419 |
acatcatcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 26741893 - 26741546
Alignment:
| Q |
20 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
119 |
Q |
| |
|
||||||||||| | |||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||| |
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|
| T |
26741893 |
catcatcatggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcgga |
26741794 |
T |
|
| Q |
120 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
219 |
Q |
| |
|
|||||||||||| || || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| |||||||| |
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|
| T |
26741793 |
agaaagtgaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatc |
26741694 |
T |
|
| Q |
220 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
319 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||| |
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|
| T |
26741693 |
taagtcgagaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaac |
26741594 |
T |
|
| Q |
320 |
aatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtg |
367 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26741593 |
aacgattgggttaattgggtggaagtgcatgggaatgagaaggttgtg |
26741546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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