View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15327_low_1 (Length: 846)
Name: NF15327_low_1
Description: NF15327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15327_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 39113524 - 39113963
Alignment:
| Q |
12 |
caagaatatacaggtagttattgccatattcaacatatcttgaaaatcataatgttttattctgcaatttggtatctggtgggacaaattaagataatta |
111 |
Q |
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| T |
39113524 |
caagaatatacaggtagttattgccatattcaacatatcttgaaaatcataatgttttattctgcaatttggtatctggtgggacaaattaagataatta |
39113623 |
T |
|
| Q |
112 |
tacagtatttcatgattagcaattttataatctgagttttaactttgttgaatgcagtcggaagcggtttagtgagaaacaagcagaaaattggtgggct |
211 |
Q |
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| T |
39113624 |
tacagtatttcatgattagcaattttataatctgagttttaactttgttgaatgcagtcggaagcggtttagtgagaaacaagcagaaaattggtgggct |
39113723 |
T |
|
| Q |
212 |
gagaatcgcgtaagagtgtatgaacaatacaatgttcgcatggttgacaagtccagtgttggtgttgggagtgaggacctggctaattgacatgacaacc |
311 |
Q |
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| T |
39113724 |
gagaatcgcgtaagagtatatgaacaatacaatgttcgcatggttgacaagtccagtgttggtgttgggagtgaggacctggctaattgacatgacaacc |
39113823 |
T |
|
| Q |
312 |
tgtaaatgagatgtttttcctcatttcggcttgagttagagcaagatcatacggatcaattacattggtttccatctaatataaaacattgaaggaagct |
411 |
Q |
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| T |
39113824 |
tgtaaatgagatgtttttcctcatttcggcttgagttagagcaagatcatacggatcaattacattggtttccatctaatataaaacattgaaggaagct |
39113923 |
T |
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| Q |
412 |
ggggactggcatagttagaagagaataggaattgattgtg |
451 |
Q |
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| T |
39113924 |
ggggactggcatagttagaagagaatagggattgattgtg |
39113963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 504 - 832
Target Start/End: Original strand, 39114013 - 39114341
Alignment:
| Q |
504 |
ccccctatatgtaccttgtgtgggggttgagggtgagaaatgtaaattcttagtaggttacaggctctggttgaaaggagctgcagtgtaaatttcataa |
603 |
Q |
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| T |
39114013 |
ccccctatatgtaccttgtgtgggggttgagggtgagaaatgtaaattcttagtaggttacaggctctggttgaaaggagctgcagtgtaaatttcataa |
39114112 |
T |
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| Q |
604 |
gcaaatgcatttacaaatttgttttcaactacagggattataaattctccagacatgacacttagtagttgatatagaatagtcttggcaaatttgttgt |
703 |
Q |
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| T |
39114113 |
gcaaatgcatttacaaatttgttttcaactacagggattataaattctccagccatgacacttagtagttgatatagaatagtcttggcaaatttgttgt |
39114212 |
T |
|
| Q |
704 |
ttcaaaattgctatatctagtagggataatatctaatgaatggtgtaagttaattatacacataacttgagtaaatttaaacaacataaccaaagaccaa |
803 |
Q |
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| T |
39114213 |
ttcaaaattgctatatctagtagggataatatctaatgaatggtgtaagttaattatacacataacttgagtaaatttaaacaacataaccaaagaccaa |
39114312 |
T |
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| Q |
804 |
aagttgttggttgaattaaaagttgatat |
832 |
Q |
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| T |
39114313 |
aagttgttggttgaattaaaagttgatat |
39114341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 11292584 - 11292725
Alignment:
| Q |
160 |
tgaatgcagtcggaagcggtttagtgagaaacaagcagaaaattggtgggctgagaatcgcgtaagagtgtatgaacaatacaatgttcgcatggttgac |
259 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||| |||||||| || ||||||||| |
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| T |
11292584 |
tgaatgcagtcgcaagcggtttagtgaaaaacaagcagaacattggtgggctgagaatcggataagagtatatgaacagtacaatgtgcgtatggttgac |
11292683 |
T |
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| Q |
260 |
aagtccagtgttggtgttgggagtgaggacctggctaattga |
301 |
Q |
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| T |
11292684 |
aagtcgaccattggtattgggagtgtggacctagctcattga |
11292725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 619
Target Start/End: Original strand, 11292923 - 11293038
Alignment:
| Q |
505 |
cccctatatgtaccttgtgtgggggttg-agggtgagaaatgtaaattcttagtaggttacaggctctggttgaaaggagctgcagtgtaaatttcataa |
603 |
Q |
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|||||| || |||||||||| ||| ||| | ||||||||||||||||| |||||||||||| |||| |||||| |||||| |||||||||||||| |
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| T |
11292923 |
cccctacatctaccttgtgtagggattgtaaggtgagaaatgtaaatttttagtaggttactatctcttactgaaagtagctgctatgtaaatttcataa |
11293022 |
T |
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| Q |
604 |
gcaaatgcatttacaa |
619 |
Q |
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| T |
11293023 |
gcgaatgtatttacaa |
11293038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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