View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15328_high_1 (Length: 240)
Name: NF15328_high_1
Description: NF15328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15328_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 37748595 - 37748381
Alignment:
| Q |
9 |
ttgtatattcctatacacaaattccaattgctagcatttgtataacacagtttaggtcacatcacatcacaca--gtttggtttgatgaagaagttggtt |
106 |
Q |
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| T |
37748595 |
ttgtatattcctatacacaaattccaattgctagcatttgtataacacagtttaggtcacatgacatcacacacagtttggtttgatgaagaagttggtt |
37748496 |
T |
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| Q |
107 |
tacaataacaaagatgcttgttttgtcttgtagaactagaaagccacctaaacttgattgtgtcttctagttgagttccttgtaaagaatcatagtgatt |
206 |
Q |
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| T |
37748495 |
tacaataacaaagatgcttgttttgtcttgtagaactagaaagccacctaaacttgattgtgtcttctagttgagttccttgtaaagaatcatagtgatt |
37748396 |
T |
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| Q |
207 |
ttgatgcctttccca |
221 |
Q |
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| T |
37748395 |
ttgatacctttccca |
37748381 |
T |
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