View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15329_high_1 (Length: 796)
Name: NF15329_high_1
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 7 - 707
Target Start/End: Original strand, 46355691 - 46356393
Alignment:
| Q |
7 |
tccaacaatatccttcgaagaacaaactggtaaactgatttctaatgaaactaattttaaaggtttctagtcttcaaatccttgtccannnnnnnngttt |
106 |
Q |
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||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46355691 |
tccaaaaacatcctttgaagaacaaactggtaaactgatttctaatgaaactaattttaaaggtttctagtcttcaaatccttgtccgttttttttgttt |
46355790 |
T |
|
| Q |
107 |
cttttgcggcatcgtnnnnnnnttgcatggatccaatgtgtagaacgagggaatcacacacattatttacaccaaatatacaaggtattggtttactggt |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46355791 |
cttttgcggcatcgtaaaaaaattgcatggatccaatgtgtagaacgagggaatcacacacattatttacaccaaatatacaaggtattggtttactggt |
46355890 |
T |
|
| Q |
207 |
ccataaacttgaagaataattcaggtgtgcatattaacgaaattggctttcaggacttctatttgcattgcaatgttacaagagtttaaatagagcacac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46355891 |
ccataaacttgaagaataattcaggtgtgcatattaacgaaattggctttcaggacttctatttgcattgcaatgttacaagagtttaaatagagcacac |
46355990 |
T |
|
| Q |
307 |
acttgtgactgcaacaacctttccatgcatcaatatcctttatctctactcgtcacgaagatgaatatgaacaactcctctaggtgatgatgcccatcaa |
406 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46355991 |
actcgtgactgcaacaacctttccatgcatcaatatcctttatctctactcgtcacgaagatgaatatgaacaactcctctaggtgatgatgcccatcaa |
46356090 |
T |
|
| Q |
407 |
aaagatgtagatacttgtaataaactttctacgttaatgaaagcaaataatccaaacatctgctttcaactttgaaatagtgaatttggatacttctcgt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46356091 |
aaagatgtagatacttgtaataaactttctacgttaatgaaagcaaataatccaaacatctgctttcaactttgaaatagtgaatttggatacttctcgt |
46356190 |
T |
|
| Q |
507 |
ggaaaatgttcccaagcagccttttgatccaaatcaatgtcgagaatctgcgtaaaaacctacaaggttactcaacatgtaaactttgtccccaaagaat |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46356191 |
ggaaaatgttcccaagcagccttttgatccaaatcaatgtcgagaatctgcgtaaaaacctacaaggttactcaacatgtaaactttgtccccaaagaat |
46356290 |
T |
|
| Q |
607 |
attcctgtcttata--tataagcagcgacataattaaatacaaacatatacaacgcaaaatgctcttactgtttccaagtgtggcatatcccattcacag |
704 |
Q |
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| T |
46356291 |
attcctgtcttataactataagcagcgacataattaaatacaaacatatacaacgcaaaatgctcttactgtttccaagtgtggcatatcccattcacag |
46356390 |
T |
|
| Q |
705 |
aca |
707 |
Q |
| |
|
||| |
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| T |
46356391 |
aca |
46356393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 46356391 - 46356424
Alignment:
| Q |
745 |
acatatactatatgtcgtcccaaaagatgattct |
778 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
46356391 |
acatataatatatgtcgtcccaaaagatgattct |
46356424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 702 - 778
Target Start/End: Original strand, 7176832 - 7176908
Alignment:
| Q |
702 |
cagacaggagagaagctcctatggcaactgttaagtttaacaaacatatactatatgtcgtcccaaaagatgattct |
778 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||| | ||| || | ||||||||||||||||| |
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| T |
7176832 |
cagacaggagagaagctcctatgacaactgttaagttcaacaaacatacaatatctgccatcccaaaagatgattct |
7176908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 7176535 - 7176574
Alignment:
| Q |
443 |
atgaaagcaaataatccaaacatctgctttcaactttgaa |
482 |
Q |
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| T |
7176535 |
atgaaagcaaataatccaaacatctgttttcaactttgaa |
7176574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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