View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15329_high_3 (Length: 728)
Name: NF15329_high_3
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 378 - 709
Target Start/End: Complemental strand, 43979615 - 43979283
Alignment:
| Q |
378 |
ttcaaagaacaatatccaacacttgcatgagtacaagaggaatttgcaggaatcgaaatcacagtagcaatgagaaataaaagagaggctttcagtttca |
477 |
Q |
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| T |
43979615 |
ttcaaagaacaatattcaacacttgcatgagtacaagaggaatttgcaggaatcgaaatcacagtagcaatgagaaataaaagagaggctttcagtttca |
43979516 |
T |
|
| Q |
478 |
gatagtaggagaaagcacacgttcagtttcatcccttagctggatagtcttctcccatcaaattgaaatttaagcttaacgaggggcataacagtcaatg |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43979515 |
gatagtaggagaaagcacacgttcagtttcatcccttagctggatagtcttctcccatcaaattgaaatttaagcttaacgaggagcataacagtcaatg |
43979416 |
T |
|
| Q |
578 |
gccatgatat-ggtcggagaattgattttgccagaattgaaaagctacaaatagcagcttcatgtgagacgtgagtttacctgtaaaagcacttcgacca |
676 |
Q |
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|||||||||| ||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43979415 |
gccatgatatgggtaggagaatcgattttgccataattgaaaagctacaaatggcagcttcatgtgagacgtgagtttacctgtaaaagcacttcaacca |
43979316 |
T |
|
| Q |
677 |
aaagagacccaaacatgtcaaacgtgaggcagg |
709 |
Q |
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| T |
43979315 |
aaagagacccaaacatgtcaaacgtgaggcagg |
43979283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 709
Target Start/End: Original strand, 38715731 - 38715836
Alignment:
| Q |
604 |
ttgccagaattgaaaagctacaaatagcagcttcatgtgagacgtgagtttacctgtaaaagcacttcgaccaaaagagacccaaacatgtcaaacgtga |
703 |
Q |
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|||||| |||||||||||||||| |||| ||||| ||| | ||||| | |||| |||| |||| |||||| ||||| ||||||||||||||||||| |
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| T |
38715731 |
ttgccaaaattgaaaagctacaagtagctgcttctattgaaatccgagttaaactgtgaaagtactttgaccaagagagaaccaaacatgtcaaacgtga |
38715830 |
T |
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| Q |
704 |
ggcagg |
709 |
Q |
| |
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|||||| |
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| T |
38715831 |
ggcagg |
38715836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 436
Target Start/End: Complemental strand, 37746177 - 37746019
Alignment:
| Q |
283 |
ttatcccctatcaccttgtgatgagggaatttctaagaagcaattgatcaaacaacttgtatgaataaaattgatgaacatattgctttattgagttcaa |
382 |
Q |
| |
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|||||| | |||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||||| ||||||||||| | | ||| || |||| ||||| |
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| T |
37746177 |
ttatcctccatcaccttgtaatgagtgaattg-taacaagcaattgatcaaacagtttgtatgaaaaaaattgatgagc--actgcatttttgaattcaa |
37746081 |
T |
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| Q |
383 |
agaacaatatccaac--------acttgcatgagtacaagaggaatttgcaggaatcgaaat |
436 |
Q |
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|||| ||||| |||| |||||||||||||||| ||||||| ||||||| ||||| |
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| T |
37746080 |
agaataatattcaactcttgtagacttgcatgagtacaaatggaatttacaggaattgaaat |
37746019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 41891894 - 41891974
Alignment:
| Q |
26 |
caaaagtgatttatcacaaatatgttgtttggataggttggatcagaattgcttttgaatatgcaaattactaaaatgggt |
106 |
Q |
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||||| |||||||| |||||||||||||||| || ||| |||| ||||| ||||| || || ||||||||||||||||| |
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| T |
41891894 |
caaaaatgatttatataaaatatgttgtttggacagtttgaatcaaaattgattttggatgtgtaaattactaaaatgggt |
41891974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 32606549 - 32606609
Alignment:
| Q |
48 |
tgttgtttggataggttggatcagaattgcttttgaatatgcaaattactaaaatgggtttt |
109 |
Q |
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|||||||||||||| |||||| | ||||||||||| |||| | |||||| |||||||||||| |
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| T |
32606549 |
tgttgtttggatagtttggatgaaaattgcttttgcatat-ctaattaccaaaatgggtttt |
32606609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 465
Target Start/End: Complemental strand, 48734540 - 48734406
Alignment:
| Q |
329 |
atcaaacaacttgtatgaataaaattgatgaacatattgctttattgagttcaaagaacaatatccaacacttgcatgagtacaagaggaatttgcagga |
428 |
Q |
| |
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|||||||| ||||||||||||||||||||| || || |||||||| |||||||| || || |||| |||||||||||| ||| ||||||| ||||| |
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| T |
48734540 |
atcaaacagtttgtatgaataaaattgatgagcac--tgatttattgaaatcaaagaataacattcaactcttgcatgagtataaggggaatttacagga |
48734443 |
T |
|
| Q |
429 |
atcgaaatcacagtagcaatgagaaataaaagagagg |
465 |
Q |
| |
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|| ||||| || |||||| |||||||| ||||||||| |
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| T |
48734442 |
atggaaattacggtagcactgagaaatgaaagagagg |
48734406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 48734819 - 48734736
Alignment:
| Q |
26 |
caaaagtgatttatcacaaatatgttgtttggataggttggatcagaattgcttttgaatatgcaaattactaaaatgggttttt |
110 |
Q |
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|||||||||||||| | |||||||| ||||| |||| |||| ||| | |||||||| || |||||||||||| ||||||||||| |
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| T |
48734819 |
caaaagtgatttatgataaatatgt-gtttgaatagtttgggtcaaacctgcttttggatgtgcaaattactataatgggttttt |
48734736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 53078384 - 53078306
Alignment:
| Q |
26 |
caaaagtgatttatcacaaatatgttgtttggataggttggatcagaattgcttttgaatatgcaaattactaaaatgg |
104 |
Q |
| |
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|||||||||||||| |||||||||||||||| || ||| |||| ||||| ||||| || || ||||||||||||||| |
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| T |
53078384 |
caaaagtgatttatataaaatatgttgtttggacagtttgaatcaaaattgattttggatgtgtaaattactaaaatgg |
53078306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 31215446 - 31215525
Alignment:
| Q |
26 |
caaaagtgatttatcacaaatatgttgtttggataggttggatcagaattgcttttgaatatgcaaattactaaaatggg |
105 |
Q |
| |
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|||||||||||||| |||||||||||| |||||| ||| |||| ||||||||||| || |||||||||||||||| |
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| T |
31215446 |
caaaagtgatttatataaaatatgttgttcggatagtttgaatcaaaattgcttttggatggaaaaattactaaaatggg |
31215525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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