View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15329_high_4 (Length: 607)
Name: NF15329_high_4
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 36273790 - 36273191
Alignment:
| Q |
1 |
ttctccttctttaaatgcccatttgataaaacaaagacagtgaatcctccatagaaatgcattctaaaatgtgtgatgaaatggtgcccatcatggaagc |
100 |
Q |
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| T |
36273790 |
ttctccttctttaaatgcccatttgataaaacaaagacagggaattctccatagaaatgcattctaaaatgtgtgatgaaatggtgcccatcatggaagc |
36273691 |
T |
|
| Q |
101 |
aaccgagtgactagaagtagtcaccaagattttacttcctgcagcacctactcttactaaatctctcaccttagcccattgatcatagtcttcattccac |
200 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36273690 |
aaccgagtgactagaagtagtcactaaaattttacttcctgcagcacctactcttactaaatctctcaccttagcccattgatcatagtgttcattccac |
36273591 |
T |
|
| Q |
201 |
atgccatccaagacgagtaggaa-tttttacctttaagtttatcttttacacgattttttagttcctcaatatctaaatctctataattttgtctataag |
299 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36273590 |
atgccgtccaagacgagtaggaactttttacctttaagtttatcttttacacgattttttagttcctcaatatctaaatctctataattttgtctataag |
36273491 |
T |
|
| Q |
300 |
cggcagtagcagtatgagttgaatcgttaacagaactgatgattttaattacgagttgcctaacgtcaaagctttctgaaacacacacccacatcttgga |
399 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36273490 |
cggcagtagcagcatgagttgaatcgttaacagaactgatgattttaattacgagttgcctaacgtcaaagctttctgaa--acacacccacatcttgga |
36273393 |
T |
|
| Q |
400 |
taaaaaatactcatttattctctcattattgaacacaagctttgcaagtgtagtctttcccacgccccgaaaccccacaatagggacaac--agaaattt |
497 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
36273392 |
taaaaaatactcatttattctctcatcattgaacacaagctttgcaagtgtagtctttcccacgctccgaaaccccacaatagggacaacagagagattt |
36273293 |
T |
|
| Q |
498 |
tgataattatcatgttgaatcaaatgctttatgatcttttctttatcatgttcccttcctatcacatctaaattaatcacacgtgagtaattcatctctc |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36273292 |
tgataattatcatgttgaatcaaatgctttatgatcttttctttatcatgttcccttcctatcacatctgaattaatcacacgtgagtaattcatctctc |
36273193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 49351866 - 49351816
Alignment:
| Q |
528 |
atgatcttttctttatcatgttcccttcctatcacatctaaattaatcaca |
578 |
Q |
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||||| |||| ||||||||||||||||||||||||||| ||| ||||||| |
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| T |
49351866 |
atgattttttgtttatcatgttcccttcctatcacatcagaatcaatcaca |
49351816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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