View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15329_high_7 (Length: 362)

Name: NF15329_high_7
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15329_high_7
NF15329_high_7
[»] chr7 (6 HSPs)
chr7 (16-302)||(26626540-26626825)
chr7 (16-272)||(26611347-26611614)
chr7 (16-216)||(26633997-26634196)
chr7 (300-362)||(26626846-26626905)
chr7 (300-362)||(26634278-26634337)
chr7 (106-146)||(26642012-26642052)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 26626540 - 26626825
Alignment:
Q  16 ataaaatgaggtaaaattacactaaggttcagaggcatcccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtca 115  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26626540 ataaaatgaggtaaaattaaactaaggttcag-ggcatcccaattgtggtaccacatatatactttgaattgggagttacaataaatgcaaatggggtca 26626638  T
Q  116 ttttcctttgcatgagttgtgtgtatagtgatgttaataatggtttgtgatccctnnnnnnnntaaagtttgttacatcagatatcaatttacaataaat 215  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||         |||||||||||||||| |||||||||||||||||||    
T  26626639 ttttcctttgcattagttgtgtgtatagtgatgttagtaatggtttgtgatccctaaaaaaaccaaagtttgttacatcatatatcaatttacaataaat 26626738  T
Q  216 ttgttagatgattgaaagagtactacatatatccttttagtgtaaatcggatttcctccagtccaaacactaatctctcgaacctta 302  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||    
T  26626739 ttgttagatgattgaaagagtactacatatatctttttaatgtaaatcggatttcctccaatctaaacactaatctctcgaacctta 26626825  T

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Target: chr7; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 26611347 - 26611614
Alignment:
Q  16 ataaaatgaggtaaaattacactaaggttcagaggcatcccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtca 115  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26611347 ataaaatgaggtaaaattaatctaaggttcagtggcatcccaattgtggtaccacatatatactgtgaattgggagttacaataaatacaaatggggtca 26611446  T
Q  116 ttttcctttgcatgagttgtgtgtatagtgatgttaataatggtttgtgatccctnnnnnnnntaaagtttgttacatcagatatcaatttacaataaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  26611447 ttttcctttgcatgagttgtgtgtatagtgatgttaataatggtttgtgatccctaaaaaaaataaagtttgttacatcagatatcaatttacaataaat 26611546  T
Q  216 ttg-----------ttagatgattgaaagagtactacatatatccttttagtgtaaatcggatttcct 272  Q
    |||           || |||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  26611547 ttgttcagtcatctttcgatgattgaaagagtaatacatatatccttttagtgtaaatcggatatcct 26611614  T

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Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 26633997 - 26634196
Alignment:
Q  16 ataaaatgaggtaaaattacactaaggttcagaggcatcccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtca 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26633997 ataaaatgaggtaaaattaaactaaggttcagaggcatcccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtca 26634096  T
Q  116 ttttcctttgcatgagttgtgtgtatagtgatgttaataatggtttgtgatccctnnnnnnnntaaagtttgttacatcagatatcaatttacaataaat 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| ||||||| ||||||||||||||||||||||||    
T  26634097 ttttcctttgcatgagttgtgtgtatagtgatattaataatggtttgtgatccctaaaaaaaataaaatttgtta-atcagatatcaatttacaataaat 26634195  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 26626846 - 26626905
Alignment:
Q  300 ttacgaacttggatggtttggacattattagactcccaaaaaatacacaagagtatgagccga 362  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  26626846 ttacgaacttggatggtttggacatta---gactcccaaaaaatacacaagagtatgagccga 26626905  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 26634278 - 26634337
Alignment:
Q  300 ttacgaacttggatggtttggacattattagactcccaaaaaatacacaagagtatgagccga 362  Q
    |||| ||||||||||||||||||||||   |||| ||||| || |||||||||||||||||||    
T  26634278 ttaccaacttggatggtttggacatta---gacttccaaacaacacacaagagtatgagccga 26634337  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 26642012 - 26642052
Alignment:
Q  106 aatggggtcattttcctttgcatgagttgtgtgtatagtga 146  Q
    |||||||| |||||  |||||||||||||||||||||||||    
T  26642012 aatggggtaatttttatttgcatgagttgtgtgtatagtga 26642052  T

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