View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15329_low_10 (Length: 313)

Name: NF15329_low_10
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15329_low_10
NF15329_low_10
[»] chr4 (2 HSPs)
chr4 (1-303)||(52351283-52351585)
chr4 (161-292)||(20297086-20297217)
[»] chr5 (16 HSPs)
chr5 (47-262)||(30474744-30474959)
chr5 (156-287)||(29871658-29871789)
chr5 (157-292)||(30749116-30749251)
chr5 (156-292)||(30242867-30243003)
chr5 (132-292)||(30522117-30522277)
chr5 (132-292)||(30562457-30562617)
chr5 (157-292)||(30399550-30399685)
chr5 (196-292)||(30430467-30430563)
chr5 (156-292)||(30482876-30483012)
chr5 (156-292)||(30713917-30714053)
chr5 (157-242)||(17982400-17982485)
chr5 (167-204)||(30206008-30206045)
chr5 (156-292)||(17418652-17418788)
chr5 (69-101)||(17418846-17418878)
chr5 (69-101)||(30243049-30243081)
chr5 (69-101)||(30399459-30399491)
[»] chr7 (1 HSPs)
chr7 (157-292)||(26706817-26706952)
[»] chr1 (2 HSPs)
chr1 (156-288)||(7098896-7099028)
chr1 (157-222)||(7582284-7582349)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 52351283 - 52351585
Alignment:
Q  1 aaggtaaactaaacaattatgaatctcaatccagcttagaaaatacaatccttcatagtgaagaattctcaaacacttgagatttgagtgaggttgaagc 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351283 aaggtaaactaaacaattatgaatctcaatccagcttggaaaatacaatccttcatagtgaagaattctcaaacacttgagatttgagtgaggttgaagc 52351382  T
Q  101 agatgaagtacttcaatagcattattggcacgtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351383 agatgaagtacttcaatagcattattggcacgtgtcttagttttaccactgttgctccatgacaggcataattctcggaggtcttttttacccatcaaat 52351482  T
Q  201 tggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351483 tggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccc 52351582  T
Q  301 cgt 303  Q
    |||    
T  52351583 cgt 52351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 292
Target Start/End: Complemental strand, 20297217 - 20297086
Alignment:
Q  161 gacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttc 260  Q
    |||| |||||||||  | |||||||||||||||||||||||||| ||| || | |||||||  |||| ||||| || || |||||  || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc 20297118  T
Q  261 cttctagctttagatcacgtaactctgccaag 292  Q
    |  | || ||||||||||||||||||| ||||    
T  20297117 caccaagttttagatcacgtaactctgtcaag 20297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 262
Target Start/End: Original strand, 30474744 - 30474959
Alignment:
Q  47 aatccttcatagtgaagaattctcaaacacttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttac 146  Q
    ||||| ||||||| ||| ||| |||| | ||||||||||||||||||||||||||  | ||||||||    |||| || | |   |||||| ||||| ||    
T  30474744 aatccgtcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagcagtagtagttggtgtctcagtttcac 30474843  T
Q  147 cacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttc 246  Q
    || | || |||||||||| | |||||||| ||||||| |||||||||||||||||||| | |||| | ||| ||||||| | ||||||| | || ||||     
T  30474844 cattattcctccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatttcccagaccttg 30474943  T
Q  247 aatgctcagttttcct 262  Q
     |||||||||||||||    
T  30474944 tatgctcagttttcct 30474959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 287
Target Start/End: Original strand, 29871658 - 29871789
Alignment:
Q  156 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 255  Q
    ||||||||| ||||||||   | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||| || |||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag 29871757  T
Q  256 ttttccttctagctttagatcacgtaactctg 287  Q
    ||||||  | || |||||||||||||||||||    
T  29871758 ttttccaccgagttttagatcacgtaactctg 29871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 292
Target Start/End: Original strand, 30749116 - 30749251
Alignment:
Q  157 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 256  Q
    |||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  || ||||||    
T  30749116 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt 30749215  T
Q  257 tttccttctagctttagatcacgtaactctgccaag 292  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30749216 tttccaccgaggtttagatcacgtaactctgtcaag 30749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 30243003 - 30242867
Alignment:
Q  156 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 255  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | || |  ||  || |||||    
T  30243003 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag 30242904  T
Q  256 ttttccttctagctttagatcacgtaactctgccaag 292  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30242903 ttttccaccgaggtttagatcacgtaactctgtcaag 30242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 292
Target Start/End: Complemental strand, 30522277 - 30522117
Alignment:
Q  132 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 231  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30522277 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30522178  T
Q  232 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 292  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30522177 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30522117  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 292
Target Start/End: Complemental strand, 30562617 - 30562457
Alignment:
Q  132 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 231  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30562617 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30562518  T
Q  232 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 292  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30562517 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 292
Target Start/End: Original strand, 30399550 - 30399685
Alignment:
Q  157 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 256  Q
    |||||||| |||||||||  | ||||||||||||||||||||||  ||| || || | | |||||| |||| || || || || |||||| || | ||||    
T  30399550 ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt 30399649  T
Q  257 tttccttctagctttagatcacgtaactctgccaag 292  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30399650 tttccaccgaggtttagatcacgtaactctgacaag 30399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 30430467 - 30430563
Alignment:
Q  196 caaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 292  Q
    |||||| || |||||| | ||||| || || | |||||||||||| | |  |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30430467 caaatttgcttctcgagcttcagacaaacttccaacattttctagacatgtaatgcttagttttcctcctagctttagatcatgtaattctgccaag 30430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 30482876 - 30483012
Alignment:
Q  156 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 255  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  ||   |||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag 30482975  T
Q  256 ttttccttctagctttagatcacgtaactctgccaag 292  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30482976 ttttccaccgaggtttagatcacgtaactctgtcaag 30483012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 30714053 - 30713917
Alignment:
Q  156 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 255  Q
    ||||||||| | |||||||  | ||||||||||||||||||||||| ||| ||  | | ||| |||| |||| |||||| | ||  ||||  || |||||    
T  30714053 tccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcag 30713954  T
Q  256 ttttccttctagctttagatcacgtaactctgccaag 292  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30713953 ttttccaccgaggtttagatcacgtaactctgtcaag 30713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 17982400 - 17982485
Alignment:
Q  157 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggc 242  Q
    ||||||||||||||||||   ||||||||||||||| || ||||| || |||  ||| |||||||| || || ||||||| |||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgtaggc 17982485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 30206008 - 30206045
Alignment:
Q  167 cataattctcggaggtcttttttacccatcaaattggc 204  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggc 30206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 17418788 - 17418652
Alignment:
Q  156 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 255  Q
    |||| |||| |||||||||| |||||||||||||||| ||||| || || ||| || | ||||||||  | | ||||| || || |||||  || ||||     
T  17418788 tccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactcaa 17418689  T
Q  256 ttttccttctagctttagatcacgtaactctgccaag 292  Q
    ||||||  | || |||||||||| ||||||| |||||    
T  17418688 ttttccaccgaggtttagatcacctaactctaccaag 17418652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 17418878 - 17418846
Alignment:
Q  69 tcaaacacttgagatttgagtgaggttgaagca 101  Q
    |||| ||||||||||||||||||||||||||||    
T  17418878 tcaagcacttgagatttgagtgaggttgaagca 17418846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 30243081 - 30243049
Alignment:
Q  69 tcaaacacttgagatttgagtgaggttgaagca 101  Q
    |||| ||||||||||||||||||||||||||||    
T  30243081 tcaagcacttgagatttgagtgaggttgaagca 30243049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 30399459 - 30399491
Alignment:
Q  69 tcaaacacttgagatttgagtgaggttgaagca 101  Q
    |||| ||||||||||||||||||||||||||||    
T  30399459 tcaagcacttgagatttgagtgaggttgaagca 30399491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 292
Target Start/End: Original strand, 26706817 - 26706952
Alignment:
Q  157 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 256  Q
    |||||||| |||||||| |  ||||| |||||| |||||||||||||| ||| || | |||||||| |||| ||||| || || |||||| || ||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt 26706916  T
Q  257 tttccttctagctttagatcacgtaactctgccaag 292  Q
    |||||  | || ||||||||||||||||||| ||||    
T  26706917 tttccaccgaggtttagatcacgtaactctgtcaag 26706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 7098896 - 7099028
Alignment:
Q  156 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 255  Q
    ||||||||| |||||||||   |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||  ||   |||    
T  7098896 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag 7098995  T
Q  256 ttttccttctagctttagatcacgtaactctgc 288  Q
     |||||| |||  ||||||||||||||||||||    
T  7098996 ctttcctcctaaatttagatcacgtaactctgc 7099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 7582349 - 7582284
Alignment:
Q  157 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataa 222  Q
    |||||||| |||||||||   ||||||||||||||||||||| ||||| ||| || | ||||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataa 7582284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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