View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15329_low_11 (Length: 300)

Name: NF15329_low_11
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15329_low_11
NF15329_low_11
[»] chr7 (1 HSPs)
chr7 (18-271)||(18977080-18977333)
[»] chr2 (3 HSPs)
chr2 (18-271)||(24933908-24934161)
chr2 (195-271)||(11007303-11007379)
chr2 (221-266)||(12725526-12725571)
[»] chr6 (1 HSPs)
chr6 (18-213)||(9366209-9366405)
[»] chr5 (2 HSPs)
chr5 (195-271)||(6476695-6476771)
chr5 (195-271)||(10554618-10554694)
[»] chr4 (2 HSPs)
chr4 (195-271)||(19080457-19080533)
chr4 (215-266)||(46168214-46168265)
[»] chr1 (1 HSPs)
chr1 (221-271)||(8548891-8548941)
[»] chr3 (2 HSPs)
chr3 (216-271)||(11349362-11349417)
chr3 (18-96)||(11349254-11349332)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 18977333 - 18977080
Alignment:
Q  18 gaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagaccgattagaagaaacgattcttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  18977333 gaatgaagatgcaaaggagcagccaattactcttctaggtgtgaataattggtgactgtatagtagataatttgagaccgattagaagaaacgattcttg 18977234  T
Q  118 aataagtggtggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18977233 aataagtggtggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgc 18977134  T
Q  218 accaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18977133 atcaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 18977080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 24934161 - 24933908
Alignment:
Q  18 gaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagaccgattagaagaaacgattcttg 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||    
T  24934161 gaatgaagatgcaaaggagcaaccaattactcttctaggtgtgaataattggtgattttatagtagataatttgagaccgattagaagaaacgattcctg 24934062  T
Q  118 aataagtggtggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24934061 aataagtggtggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgc 24933962  T
Q  218 accaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24933961 atcaagaaagttaaaaatttatggagaccatttaatgagaattatgagcctttg 24933908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 11007379 - 11007303
Alignment:
Q  195 aaataaagagcatgattctatgcaccaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    ||||| ||||| ||||||  |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11007379 aaatagagagcgtgattcggtgcatcaagaaagttgaaaatttgtggagaccatttaatgagaattatgagcctttg 11007303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 12725526 - 12725571
Alignment:
Q  221 aagaaagttgaaaatttatggagaccatttaatgagaattatgagc 266  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||    
T  12725526 aagaaagttggaaatttatggagaccatttaatgaaaattatgagc 12725571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 9366209 - 9366405
Alignment:
Q  18 gaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagaccgattagaagaaacgattcttg 117  Q
    |||||||||||||||||||||||||||||||||||| |||||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  9366209 gaatgaagatgcaaaggagcagccaattactcttctgggtgtgaataattggtcattgtatagtagataatttgagaccgattagaagaaacgattcttg 9366308  T
Q  118 aataagtggtggttgattacattgctggtctttcaagcactaattgatac-aaagcgatattcatttaccttaaatgaaaataaagagcatgattct 213  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9366309 aataagtggtggttgattacaatgctggtctttcaagcactaattgatacaaaagcgatattcatttaccttaaatgaaaataaagagcatgattct 9366405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 6476695 - 6476771
Alignment:
Q  195 aaataaagagcatgattctatgcaccaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    ||||||||||| ||||||  | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6476695 aaataaagagcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatgagaattatgagcctttg 6476771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 10554694 - 10554618
Alignment:
Q  195 aaataaagagcatgattctatgcaccaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    ||||||||||| ||||||  | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  10554694 aaataaagagcgtgattccgtacatcaagaaagttggaaatttatggaaaccatttaatgagaattatgagcctttg 10554618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 19080533 - 19080457
Alignment:
Q  195 aaataaagagcatgattctatgcaccaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    ||||||||||| ||||||  | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19080533 aaataaagagcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatgagaattatgagcctttg 19080457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 46168265 - 46168214
Alignment:
Q  215 tgcaccaagaaagttgaaaatttatggagaccatttaatgagaattatgagc 266  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  46168265 tgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagc 46168214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 8548941 - 8548891
Alignment:
Q  221 aagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    |||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  8548941 aagaaagttgaaaatttatggagaccatgtaataagaattataagcctttg 8548891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 11349362 - 11349417
Alignment:
Q  216 gcaccaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttg 271  Q
    |||| ||||||| |||||||||||||||||  ||||||||||||| ||||||||||    
T  11349362 gcacaaagaaaggtgaaaatttatggagactttttaatgagaattgtgagcctttg 11349417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 11349254 - 11349332
Alignment:
Q  18 gaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagacc 96  Q
    |||||||||||||||||| || ||||||||||| ||  ||||| || ||||||| |  ||||| |||||||||||||||    
T  11349254 gaatgaagatgcaaaggaacatccaattactctactgagtgtgaataattggtggtgttatagtagataatttgagacc 11349332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University