View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15329_low_12 (Length: 250)
Name: NF15329_low_12
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_low_12 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 30133076 - 30133311
Alignment:
| Q |
13 |
aatattaggtttaagataggaagaatctcaaattatagagacaaaatctgtatttctttagtacagagtcattagttacacttcgtgtacattaacatgc |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30133076 |
aatattaggttcaagataggaagaatctcaaattataaagacaagatctgtatttctttagtacagagtcattagttacacttcgtgtacattaacatgc |
30133175 |
T |
|
| Q |
113 |
tcaatttgaataattaactatannnnnnnnnnagtatacgaaatgactcaannnnnnnnnnnnngacaaacgacccaatattaattgaaagtaatattat |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
30133176 |
tcaatttgaataattaactata--ttttttttagtatacgaaatgactcaattttttattgtttgacaaacaacccaatattaattgaaagtaatgttat |
30133273 |
T |
|
| Q |
213 |
cattcaaattaatttagtcacgattcaaaacgattata |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30133274 |
cattcaaattaatttagtcacgattcaaaacgattata |
30133311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 29938817 - 29938878
Alignment:
| Q |
190 |
atattaattgaaagtaa-tattatcattcaaattaatttagtcacgattcaaaacgattata |
250 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| | | |||||||||| |||||| |
|
|
| T |
29938817 |
atattaattgaaagtaaatattacaattcaaattaatttatttatgattcaaaaccattata |
29938878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University