View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15329_low_2 (Length: 781)
Name: NF15329_low_2
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 701; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 11 - 770
Target Start/End: Complemental strand, 4973908 - 4973148
Alignment:
| Q |
11 |
caaaatcatctgtcaacgtgatcacatgtgaagaaactttggaatgagctactggtggatttaattcatggtgcatgtattgaagacaataggcagttcc |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4973908 |
caaaatcatctgtcaacgtgaccacatgtgaagaaactttggaatgagctactggtggatttaattcatggtgcatgtattgaagacaataggcagttcc |
4973809 |
T |
|
| Q |
111 |
cattataatccttaccctttcactccaactaagacgttcaacttctttaactgaaaaattaagaaacaaaatattcagaacttagcctttaaattacaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4973808 |
cattataatccttaccctttcactccaactaagacgttcaacttctttaactgaaaaattaagaaacaaaatattcagaacttagcctttaaactacaag |
4973709 |
T |
|
| Q |
211 |
atataattttatttagattgcggtttgcaattgcaattgcaatataannnnnnnngaagcttctgcaacaacatctcaactgcaa-tataaaagtctgca |
309 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4973708 |
atataattttacttagattgcagtttgcaattgcaattgcaatataattttttttgaagcttctgcaacaacatctcaactgcaaatataaaagtctgca |
4973609 |
T |
|
| Q |
310 |
acgtgaccgtaactgtaatttaaaactatgttttgagcaatgtaagaactaaaacaaaaagcattaccatgtagatgctcagataggcttccatttggag |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4973608 |
acgtgaccgtaactgtaatttaaaaccatgttttgagcaatgtaagaactaaaacaaaaagcattaccatgtagatgctcagataggcttccatttggag |
4973509 |
T |
|
| Q |
410 |
catattcaaatataaacatccttgtgaatggttcttcttcctcacagtatccaattagattaacaaaattcttatggttaatgcgggacaatgatgcaat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
4973508 |
catattcaaatataaacatccttgtgaatggttcttcttcctcacagtatccaattagattaacaaagttcttatggttaatgcgggacaatgacgcaat |
4973409 |
T |
|
| Q |
510 |
ctgtagcatacacgaaactagattagcaaaagagaagtttgggattgttaaatgcaatcatcttctttctattgaatttaagaggacaataggaaaacct |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4973408 |
ctgtagcatacacgaaactagattagcaaaagagaagtttgggattgttaaatgcaatcatcttctttctattgaatttaagaggacaataggaaaacct |
4973309 |
T |
|
| Q |
610 |
ttctcctgtagttcaattccatggtcttagtccattcctgtctagtattaatcagaccagaaacaactgcaatctcgactccactagacagtgttccttt |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4973308 |
ttctcctgtagttcaattccatggtcttagtccattcctgtctagtattaatcagaccagaaacaactgcaatctcgactccactagacagtgttccttt |
4973209 |
T |
|
| Q |
710 |
gtatatagtgcatgcttcaacattggtaacaatattgctgaaatcctcacaagctgtctct |
770 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4973208 |
gtatatagtgcatgcttcaacattggtaacaatattgctgaaatcctcacaagctgtctct |
4973148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 11 - 770
Target Start/End: Complemental strand, 4991816 - 4991056
Alignment:
| Q |
11 |
caaaatcatctgtcaacgtgatcacatgtgaagaaactttggaatgagctactggtggatttaattcatggtgcatgtattgaagacaataggcagttcc |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4991816 |
caaaatcatctgtcaacgtgaccacatgtgaagaaactttggaatgagctactggtggatttaattcatggtgcatgtattgaagacaataggcagttcc |
4991717 |
T |
|
| Q |
111 |
cattataatccttaccctttcactccaactaagacgttcaacttctttaactgaaaaattaagaaacaaaatattcagaacttagcctttaaattacaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4991716 |
cattataatccttaccctttcactccaactaagacgttcaacttctttaactgaaaaattaagaaacaaaatattcagaacttagcctttaaactacaag |
4991617 |
T |
|
| Q |
211 |
atataattttatttagattgcggtttgcaattgcaattgcaatataannnnnnnngaagcttctgcaacaacatctcaactgcaa-tataaaagtctgca |
309 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4991616 |
atataattttacttagattgcagtttgcaattgcaattgcaatataattttttttgaagcttctgcaacaacatctcaactgcaaatataaaagtctgca |
4991517 |
T |
|
| Q |
310 |
acgtgaccgtaactgtaatttaaaactatgttttgagcaatgtaagaactaaaacaaaaagcattaccatgtagatgctcagataggcttccatttggag |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4991516 |
acgtgaccgtaactgtaatttaaaaccatgttttgagcaatgtaagaactaaaacaaaaagcattaccatgtagatgctcagataggcttccatttggag |
4991417 |
T |
|
| Q |
410 |
catattcaaatataaacatccttgtgaatggttcttcttcctcacagtatccaattagattaacaaaattcttatggttaatgcgggacaatgatgcaat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4991416 |
catattcaaatataaacatccttgtgaatggttcttcttcctcacagtatccaattagattaacaaagttcttatggttaatgcgggacaatgacgcaat |
4991317 |
T |
|
| Q |
510 |
ctgtagcatacacgaaactagattagcaaaagagaagtttgggattgttaaatgcaatcatcttctttctattgaatttaagaggacaataggaaaacct |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4991316 |
ctgtagcatacacgaaactagattagcaaaagagaagtttgggattgttaaatgcaatcatcttctttctattgaatttaagaggacaataggaaaacct |
4991217 |
T |
|
| Q |
610 |
ttctcctgtagttcaattccatggtcttagtccattcctgtctagtattaatcagaccagaaacaactgcaatctcgactccactagacagtgttccttt |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4991216 |
ttctcctgtagttcaattccatggtcttagtccattcctgtctagtattaatcagaccagaaacaactgcaatctcgactccactagacagtgttccttt |
4991117 |
T |
|
| Q |
710 |
gtatatagtgcatgcttcaacattggtaacaatattgctgaaatcctcacaagctgtctct |
770 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4991116 |
gtatatagtgcatgcttcaacattggtaacaatattgctgaaatcctcacaagctgtctct |
4991056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 373 - 514
Target Start/End: Original strand, 35832150 - 35832291
Alignment:
| Q |
373 |
ttaccatgtagatgctcagataggcttccatttggagcatattcaaatataaacatccttgtgaatggttcttcttcctcacagtatccaattagattaa |
472 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| || || | | |||||||||||||||||||||||| |||||||| ||||| ||||| |
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|
| T |
35832150 |
ttaccatgtagatgctcgaataagcttccatttggagcatactccaacaccatcatccttgtgaatggttcttcttcgtcacagtaaccaataagattgg |
35832249 |
T |
|
| Q |
473 |
caaaattcttatggttaatgcgggacaatgatgcaatctgta |
514 |
Q |
| |
|
||| ||||||||||||| ||||||| || |||||||||| |
|
|
| T |
35832250 |
taaagttcttatggttaacacgggacagagaagcaatctgta |
35832291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 668 - 769
Target Start/End: Original strand, 35832451 - 35832552
Alignment:
| Q |
668 |
agaaacaactgcaatctcgactccactagacagtgttcctttgtatatagtgcatgcttcaacattggtaacaatattgctgaaatcctcacaagctgtc |
767 |
Q |
| |
|
|||| |||| |||||||| |||||||| |||||||||||||| ||||| |||||| ||||| | || ||| |||||||||||||| ||||| |||||| |
|
|
| T |
35832451 |
agaatcaacagcaatctcaactccactggacagtgttcctttatatatggtgcatttttcaaaactgttaatgatattgctgaaatcttcacaggctgtc |
35832550 |
T |
|
| Q |
768 |
tc |
769 |
Q |
| |
|
|| |
|
|
| T |
35832551 |
tc |
35832552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 35831920 - 35832036
Alignment:
| Q |
49 |
ttggaatgagctactggtggatttaattcatggtgcatgtattgaagacaataggcagttcccattataatccttaccctttcactccaactaagacgtt |
148 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||||| ||||||||||| || |||||||| |||| ||| | |||| | ||||| |||| ||| |
|
|
| T |
35831920 |
ttggaatgagagactggtggattcagatcatggtgcatgtactgaagacaataagctgttcccatgataaccctcatccttgccatccaatcaagatgtt |
35832019 |
T |
|
| Q |
149 |
caacttctttaactgaa |
165 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
35832020 |
caatttccttaactgaa |
35832036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 378 - 488
Target Start/End: Original strand, 37747772 - 37747882
Alignment:
| Q |
378 |
atgtagatgctcagataggcttccatttggagcatattcaaatataaacatccttgtgaatggttcttcttcctcacagtatccaattagattaacaaaa |
477 |
Q |
| |
|
||||| ||||||| |||| |||||||||| ||||||||||| | ||||| || ||||| || |||||||| ||||| |||||||| ||||| |||||| |
|
|
| T |
37747772 |
atgtaaatgctcaaatagtgttccatttggggcatattcaaaaaccaacattctggtgaaaggctcttcttcttcacaatatccaataagattgacaaaa |
37747871 |
T |
|
| Q |
478 |
ttcttatggtt |
488 |
Q |
| |
|
||||| ||||| |
|
|
| T |
37747872 |
ttcttgtggtt |
37747882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 729
Target Start/End: Complemental strand, 41619878 - 41619836
Alignment:
| Q |
687 |
actccactagacagtgttcctttgtatatagtgcatgcttcaa |
729 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
41619878 |
actccactggacagtgttcctttgtatatggtgcatgcttcaa |
41619836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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