View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15329_low_6 (Length: 492)
Name: NF15329_low_6
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 4859123 - 4859597
Alignment:
| Q |
1 |
gtaaggcctggggttcgaacccctgataccaccnnnnnnntatatatatcttgtcttgtttttattgaattaacagagattattaagtcactttgttaat |
100 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859123 |
gtaaggtctggggttcgaacccctgataccaccaaaaaa-tatatatatcttgtcttgtttttattgaattaacagagattattaagtcactttgttaat |
4859221 |
T |
|
| Q |
101 |
catatcataactcataaggatgtaaataatggtaacaaatactaacaagtgcttttcaaagacaaaatttccaatacttgtgttcgtgatgccaatggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
4859222 |
catatcataactcataaggatgtaaataatggtaacaaatgctaacaagtgcttttcaa-gacaaaatttctaatacttgtgttcgtgatgccaatggta |
4859320 |
T |
|
| Q |
201 |
gttaaagtttttaaatgcaaaccacatctaatactacttcaccctagtatttgtcccaacaaaaaacaaaggttgattttgatatcactggttggttgat |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859321 |
gttaaagtttttaaatgcaaaccacatctaacactacttcaccctagtatttgtcccaacaaaaaacaaaggttgattttgatatcactggttggttgat |
4859420 |
T |
|
| Q |
301 |
agcaacctgactgagaaatatcaattgctgtaacttgtaaggtaaagaggtgctgctgccactgccctagcctgcatgcatgtttggatattagaattca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4859421 |
agcaacctgactgagaaatatcaattgctgtaacttgtaaggtaaagaggtgctgctgccactgccctagcctgcatgcatgtttggatattagaattga |
4859520 |
T |
|
| Q |
401 |
aatgcctctcatgtcatgcaaattggtttcctcttttattctcatactctctctcctcattatgtccccttcctttg |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859521 |
aatgcctctcatgtcatgcaaattggtttcctcttttattctcatactctctctcctcattatgtccccttcctttg |
4859597 |
T |
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