View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15329_low_7 (Length: 444)
Name: NF15329_low_7
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 42 - 428
Target Start/End: Complemental strand, 2951350 - 2950964
Alignment:
| Q |
42 |
ctaatgtaaggataatttttgaacaataacaattaatgtagatgtaagagtcgttgtttacttatattcaacgctaaacaaatgaatgcatttttgttta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2951350 |
ctaatgtaaggataatttttgaacaataacaattaatgtagatgcaagagtcgttgtttacttatattcgacgctaaacaaatgaatgcatttttgttta |
2951251 |
T |
|
| Q |
142 |
taattgagtccataaggatgaaagaataaaaacgagatttatttatgcaggggttcgagtttaaacctgttattctcgcttttgcatacatgtgagtcta |
241 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951250 |
taattgagtccagaaggatgaaagaataaaaacgacgtttatttatgcagaggttcgaatttaaacctgttattctcgcttttgcatacatgtgagtcta |
2951151 |
T |
|
| Q |
242 |
atcactatactattttgaagnnnnnnntaatagggtttcattattcatttcacattgtaacgctcttaccagacagtaccttttaaagttatgaagcaat |
341 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2951150 |
atcactatactattttgaagaaaaaaataatagggtttcattattcatttcacattgtaacgctcttaccagacagtacctttttaagttatgaagcaat |
2951051 |
T |
|
| Q |
342 |
acaagtcatcctcttggaagactacacaatcaaccattttaatattgagacgtcaagtccccctaaagaaaaagaaagagacaatgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951050 |
acaagtcatcctcttggaagactacacatacaaccattttaatattgagaggtcaagtccccctaaagaaaaagaaagagacaatgt |
2950964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University