View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15329_low_9 (Length: 320)
Name: NF15329_low_9
Description: NF15329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15329_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 2951790 - 2951505
Alignment:
| Q |
16 |
atggagtagatagtgagagattgaataaatattagaggaacatgtacatgacttcatccccacataactatgttaataattaagatataagttggtttnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2951790 |
atggagtagatagtgagagattgaataaatattagaggaacatgtacatgacttcatccccacataactatgttaataattaagatataagttggtttaa |
2951691 |
T |
|
| Q |
116 |
nnnnnntttaagatataagttaagtattccctccggccannnnnnnggttaagttccgtccagcctttattataactagaaatcctactttcacacttga |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2951690 |
aaaaaatttaagatataagttaagtattccctccggccatttttttggttaagttccgtccagcctttattataactagaaatcctactttcacacttga |
2951591 |
T |
|
| Q |
216 |
taaaaataataacagttaagtcccttaaaagaaataatgataatagttaagtgtacttaattttcttaatttcacattagaaataa |
301 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2951590 |
taaaaataataatagttaagtcccataaaagaaataatgataatagttaagtgtacttaattttcttaatttcacattagaaataa |
2951505 |
T |
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