View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_10 (Length: 522)
Name: NF1532_high_10
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Original strand, 12565486 - 12565985
Alignment:
| Q |
7 |
gtgagatgaaaccaaatgacatttttactatagatctcatatttactccaatagtaattgcataaatacacatcacatgtctttcattcaacactagtca |
106 |
Q |
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| T |
12565486 |
gtgatatgaaaccaaatgacatttttactatagatctcatatttactccaatagtaattgcataaatacacatcacatgccttccattcaacactagtca |
12565585 |
T |
|
| Q |
107 |
acactttagatgcaatagagtagttatggaatgttcatgaatgactatgactctttaatgcaaagcttgcttcaattttggaaggcaaaaaatgcaatac |
206 |
Q |
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| T |
12565586 |
acactttagatgcaatagagtagttatgaaatgttcatgaatgactatgactttttaatgtaaagcttgcttcaattttggaaggcaaaaaatgcaatac |
12565685 |
T |
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| Q |
207 |
tcttttgaatcaattgatgattttcctttcgaatcagactaagctatagaaaatttgtctgtagcatcggcttttttctcgttttaccatcatttaatca |
306 |
Q |
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| T |
12565686 |
tcttttgaatgaattgctgattttcctttcgaatcagactaagatatagaaaatttgatcgtagcatcggcttttttctcgttttaccatcatttaatca |
12565785 |
T |
|
| Q |
307 |
aacacaggtaaaagttcagagtactcccttctacattttactcaacatttgatcattagcttattttactcaaatgttagctgctagctc----tcg--- |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| || ||||| | ||| ||| |
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| T |
12565786 |
aacacaggtaaaagttcagagtactcccttctacattttactcaacatttggtcattaacttatttcactcgaaggttagtaatttactcaacatcggct |
12565885 |
T |
|
| Q |
400 |
------tatgttttcacatgctggtatttcttttgaattacaaatgttagtaattttagcattatcctgaggatgaaggtcgaattctcgacctccaagg |
493 |
Q |
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| T |
12565886 |
tttttctatgttttcacatgctggtatttcttttgaattacaaatgttagtaattttagcattatcctgaggatgaaggtcgaactctcgacctccaagg |
12565985 |
T |
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