View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_14 (Length: 486)
Name: NF1532_high_14
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 30 - 392
Target Start/End: Complemental strand, 35499367 - 35499005
Alignment:
| Q |
30 |
tgatgcaatgtaatagttgatatgtttcatttacaattcaataatcaggggcttatccatgaagtgttcaccacagtattacgtggcttgtctggggcca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35499367 |
tgatgcaatgtaatagttgatatgtttcatttacaattcaataatcaggggcttatccatgaagtgttcaccacagtattacgtggcttgtctggggcca |
35499268 |
T |
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| Q |
130 |
aagttactaagcctggaaaatttaggagttgtcaagatggttatgcagtgaaatcatctctgaaagctgaagatggaattttgtatccccttgagaagag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35499267 |
aagttactaagcctggaaaatttaggagttgtcaagatggttatgcagtgaaatcatctctgaaagctgaagatggaattttgtatccccttgagaagag |
35499168 |
T |
|
| Q |
230 |
cttcttctttctacctaaacctcccactcttattactcatgaagaggtgaaatttgagttctgtttactgactatcatatattaaatactggctgtcatg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
35499167 |
cttcttctttctacctaaacctcccactcttattactcatgaagaggtgaaatttgagttctgtttactgaccatcatatattaaatactggttgtcatg |
35499068 |
T |
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| Q |
330 |
catgatatcacctgttagaggttttgattgtttcgttgtttctgactagattgactatgtgga |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35499067 |
catgatatcacctgttagaggttttgattgtttcgttgtttctgactagattgactatgtgga |
35499005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 41 - 282
Target Start/End: Original strand, 7072237 - 7072478
Alignment:
| Q |
41 |
aatagttgatatgtttcatttacaattcaataatcaggggcttatccatgaagtgttcaccacagtattacgtggcttgtctggggccaaagttactaag |
140 |
Q |
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|||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||| |||| ||||||||| ||| |
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| T |
7072237 |
aatagttgatatatttaattcactattcaataatcaggggcttatccatgaagtgtttaccacaatattgcgtggtttgtccgggggcaaagttaccaag |
7072336 |
T |
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| Q |
141 |
cctggaaaatttaggagttgtcaagatggttatgcagtgaaatcatctctgaaagctgaagatggaattttgtatccccttgagaagagcttcttctttc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
7072337 |
cctggaaaatttaggagttgtcaagatggttatgcagtgaagtcatctttgaaagctgaagatggaattctgtatccacttgagaagagcttcttctttc |
7072436 |
T |
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| Q |
241 |
tacctaaacctcccactcttattactcatgaagaggtgaaat |
282 |
Q |
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| T |
7072437 |
tgcctaaacctcccactcttattcttcatgaagaggtaaaat |
7072478 |
T |
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