View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_19 (Length: 453)
Name: NF1532_high_19
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 66 - 302
Target Start/End: Original strand, 13889869 - 13890116
Alignment:
| Q |
66 |
acatgcatgaattttgtctatgttgatcaagnnnnnnnnnnncaaccataactcaacaaataaaagcttcaacttcttttttccgatcaaaattgaacaa |
165 |
Q |
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| T |
13889869 |
acatgcatgaattttgtctatgttgaataagtttttttttttcaacaataactaaacaaataaaagcttcaacttcttttttccgattaaaattgaacaa |
13889968 |
T |
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| Q |
166 |
agaaagccaccaaattagtcaatctttccttaat----------ggtcaaaa-gacttacttaaccatgccagattaacttcttctaaacataagaattt |
254 |
Q |
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| T |
13889969 |
agaaagccaccaaattagtcaatctttccttaattaagtataatggtcaaaaagacttacttaaccatgccagattaacttcttctaaacataagaattt |
13890068 |
T |
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| Q |
255 |
ccaatcaaattattgccgttgaccatgcatagattcattaactaaggt |
302 |
Q |
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| T |
13890069 |
ccaatcaaattattgccgttgaccatgcatagattcattaactaaggt |
13890116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 13890184 - 13890253
Alignment:
| Q |
370 |
gaccaaaccacccttcttcactctctctatctctatctatacatttcatttccctttattctctttaacc |
439 |
Q |
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| T |
13890184 |
gaccaaaccacccttcttcactctctctatctctatctatacatttcatttccctttattctctttaacc |
13890253 |
T |
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