View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_2 (Length: 704)
Name: NF1532_high_2
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 82 - 610
Target Start/End: Original strand, 22756352 - 22756874
Alignment:
| Q |
82 |
cagagacacatagttgtgacacaacactaagaataaaatattgaaaaacaaaagaaggaagaagacatagtcttttgtattataaaatggacacaaacca |
181 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22756352 |
cagaaacacatagttgtgacacaacactaagaataaaatattgtaaaacaaaagaaggaagaagacatagtcttttgtattataaaatggacacaaacca |
22756451 |
T |
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| Q |
182 |
aagaagctgttatgtattgtgattcacagattccaacaaacgccgtttccttacaaaagagagagagtgtgtttctgtctgaaaggttctgtaacgtttg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22756452 |
aagaagctgttatgtattgtgattcacagattccaacaaacgccgtttccttacaaaagagagagagtgtgtttctgtctgaaaggttctgtaacgtttg |
22756551 |
T |
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| Q |
282 |
cagcagctttcataacagacatgatttcaaaagctgtttatattgtctctcataaagcttaatcattcatctttcaattgtgaagccagtacnnnnnnnn |
381 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
22756552 |
cagcagctttcataacagacatgatttcaaaagcagcttatattgtctctcataaagcttaatcattcatcattcaattgtgaaaccagtac------at |
22756645 |
T |
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| Q |
382 |
nnnnnnnnnnttaagtactatatagtaatagtaatgatgagttatatttgatcaaagtggtgaaaaagtgaaaaggtttttgacttgcaatgatgatgaa |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22756646 |
gatgatgatgttaagtactatatagtaatagtaatgatgagttatatttgatcaaagtggtgaaaaagtgaaaaggtttttgacttgcaatgatgatgaa |
22756745 |
T |
|
| Q |
482 |
taatggtgaagaagatgaactctatgaacagttatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcct |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22756746 |
taatggtgaagaagatgaactctatgaacagttatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcct |
22756845 |
T |
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| Q |
582 |
caaggacacatggaacaagtttgtttttg |
610 |
Q |
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| T |
22756846 |
caaggacacatggaacaagtttgtttttg |
22756874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 7077642 - 7077581
Alignment:
| Q |
540 |
gttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatggaacaagt |
601 |
Q |
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| T |
7077642 |
gttgatgttccttgtgttggtcaaagtgttttctatttcccacaaggacacatggaacaagt |
7077581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 9732914 - 9732871
Alignment:
| Q |
564 |
agagttttctattttcctcaaggacacatggaacaagtttgttt |
607 |
Q |
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| T |
9732914 |
agagttttctactttcctcaaggtcacatggaacaagtgtgttt |
9732871 |
T |
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