View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_21 (Length: 442)
Name: NF1532_high_21
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 48 - 413
Target Start/End: Original strand, 54790844 - 54791209
Alignment:
| Q |
48 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
147 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790844 |
ttatacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
54790943 |
T |
|
| Q |
148 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790944 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
54791043 |
T |
|
| Q |
248 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaa |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791044 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaa |
54791143 |
T |
|
| Q |
348 |
gtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgt |
413 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791144 |
gtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgt |
54791209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 48 - 413
Target Start/End: Complemental strand, 54778301 - 54777936
Alignment:
| Q |
48 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
147 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778301 |
ttatacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
54778202 |
T |
|
| Q |
148 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778201 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
54778102 |
T |
|
| Q |
248 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaa |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778101 |
agttcaaatataaggatttgatgcaacatgaaaccggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaa |
54778002 |
T |
|
| Q |
348 |
gtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgt |
413 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778001 |
gtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgt |
54777936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 48 - 413
Target Start/End: Original strand, 52283502 - 52283867
Alignment:
| Q |
48 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
147 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
52283502 |
ttatacttacgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagcgagtctgagattgaggaatac |
52283601 |
T |
|
| Q |
148 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
52283602 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaatttaaacggtacactcaggtgtccatattgtgctggaaaaaagaagcaag |
52283701 |
T |
|
| Q |
248 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaa |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52283702 |
agttcaaatataaggatttgatgcaacatgcaactggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaa |
52283801 |
T |
|
| Q |
348 |
gtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgt |
413 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
52283802 |
gtttttggagactgacctagcaaatgaagcagaccaaatacctcccccgcctttgaccgaagctgt |
52283867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 59 - 415
Target Start/End: Original strand, 798789 - 799145
Alignment:
| Q |
59 |
aactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatactctgacaaacc |
158 |
Q |
| |
|
|||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
798789 |
aactgacatttgaaatcttacgcagagtttcaatggactacagctctgaagaagagtcagagatcagtgagtctgagatcgaggaatactctgagaaacc |
798888 |
T |
|
| Q |
159 |
ttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagagttcaaatat |
258 |
Q |
| |
|
||| | ||||||| || |||||||||||||| |||||| || || || || |||||||| ||||| ||||||| || |||||||| ||||| ||| |
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| T |
798889 |
atatgaagagttaagggccggtaaatacaaagtcaagaacaacaatgggactcttaggtgcccgtattgctctggaaagaaaaagcaagaattcaagtat |
798988 |
T |
|
| Q |
259 |
aaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggaga |
358 |
Q |
| |
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|||||| || ||||||||||| | |||||| |||||||||| |||||||||| | | || ||||| ||||||||||| ||||||||||||| |||| || |
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|
| T |
798989 |
aaggatctgttgcaacatgcatctggagtaggcaaaggttcggcaaacagaagcacaaagcaaaaagcaaaccacctggctctggcaaagtttttgagga |
799088 |
T |
|
| Q |
359 |
ctgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgttg |
415 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||| |||||||||| | | |||||||| |
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|
| T |
799089 |
ctgacttagcaaatgaagcagaccaagtacctcgcccggctttgactgtagctgttg |
799145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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