View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_22 (Length: 433)
Name: NF1532_high_22
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 218 - 423
Target Start/End: Original strand, 32389101 - 32389306
Alignment:
| Q |
218 |
cgtatttactttatttagctctctacatttatcgatctatattttttccctaaaaagacaaaacacagcttaaaaaattatggatttgtccaaaaaattc |
317 |
Q |
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| T |
32389101 |
cgtatttactttatttagctctctacatttatcaatctatattttttccctaaaaagacaaaacacagcttaaaaaattatggatttgtccaaaaaattc |
32389200 |
T |
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| Q |
318 |
caagagcatcatgaaaattaagtcattttaaattgaaatgaaattactgttataactgtattttattgtggcactggcatgaacctagctactttttaca |
417 |
Q |
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| T |
32389201 |
caagagcatcatgaaaattaagtcattttaaattgaaatgaaattactgttataactgtattttattgtggcactggcatgaacctagctactttttaca |
32389300 |
T |
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| Q |
418 |
tattct |
423 |
Q |
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|||||| |
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| T |
32389301 |
tattct |
32389306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 32388912 - 32389002
Alignment:
| Q |
27 |
atttttaccacaaataatttggttacatcgaacttgtctctcaaccacacttcatctttggtgcaccttatgtgtctctccaccattcatg |
117 |
Q |
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| T |
32388912 |
atttttaccacaaataatttggttacatcgaacttgtctctcaaccacacttcatctttggtacaccttatatgtctctccaccattcatg |
32389002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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