View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_24 (Length: 425)
Name: NF1532_high_24
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 3923610 - 3923186
Alignment:
| Q |
1 |
cttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttgggtacatatacaactaatttgaataattcgaacgatgtggatttaagattt |
100 |
Q |
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| T |
3923610 |
cttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttgggtacatatacaactaatttgaataattcgaacgatgtggatataagattt |
3923511 |
T |
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| Q |
101 |
gatgatgtacctgcagatgatagatgggtggatcttaataggcctggaattattgagaatgcaagggaggtgaagtttgctagtaagattcatttgagga |
200 |
Q |
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| T |
3923510 |
gatgatgtacctgcagatgatagatgggtggatcttaataggcctggaattattgagaatgcaagggaggtgaagtttgctagtaagattcatttgagga |
3923411 |
T |
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| Q |
201 |
tttctttgaatggtggttatcatgtgtcggacgagcctctcgaatatagtagcgactttaggccttcatcaagagatcattggccaccaagcattggtgt |
300 |
Q |
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| T |
3923410 |
tttctttgaatggtggttatcatgtgtcggacgagcctctcgaatatagtagtgactttaggccttcatcaagagatcattggccaccaagcattggtgt |
3923311 |
T |
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| Q |
301 |
tttggaacttggaatcttaaaagcaactaatttgatgccaatgaagattggggggagaaccgatgcatattgtgtggcgaaatatggaccaaaatgggta |
400 |
Q |
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| T |
3923310 |
tttggaacttggaatcttaaaagcaactaatttgatgccaatgaagattggggggagaaccgatgcatattgtgtggcgaaatatggaccaaaatgggta |
3923211 |
T |
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| Q |
401 |
aggacaagaaccagtgttgacagcc |
425 |
Q |
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| T |
3923210 |
aggacaagaacaagtgttgacagcc |
3923186 |
T |
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