View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_30 (Length: 405)
Name: NF1532_high_30
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_30 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 52698994 - 52698602
Alignment:
| Q |
13 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
112 |
Q |
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| T |
52698994 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
52698895 |
T |
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| Q |
113 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
212 |
Q |
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| T |
52698894 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
52698795 |
T |
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| Q |
213 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
312 |
Q |
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| T |
52698794 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
52698695 |
T |
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| Q |
313 |
agagaatttcatttggacttccttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaa |
405 |
Q |
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| T |
52698694 |
agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaa |
52698602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 52721634 - 52721242
Alignment:
| Q |
13 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
112 |
Q |
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| T |
52721634 |
aatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaaga |
52721535 |
T |
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| Q |
113 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
212 |
Q |
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| T |
52721534 |
aacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattc |
52721435 |
T |
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| Q |
213 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
312 |
Q |
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| T |
52721434 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaa |
52721335 |
T |
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| Q |
313 |
agagaatttcatttggacttccttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaa |
405 |
Q |
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| T |
52721334 |
agcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaa |
52721242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 52712813 - 52712424
Alignment:
| Q |
13 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
112 |
Q |
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||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | || |||||||||||||||||| |
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| T |
52712813 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
52712714 |
T |
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| Q |
113 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
212 |
Q |
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| T |
52712713 |
aacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattc |
52712614 |
T |
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| Q |
213 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
312 |
Q |
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|||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
52712613 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa |
52712514 |
T |
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| Q |
313 |
agagaatttcatttggacttccttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacc |
402 |
Q |
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| T |
52712513 |
agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacc |
52712424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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