View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_36 (Length: 392)
Name: NF1532_high_36
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 39082465 - 39082835
Alignment:
| Q |
1 |
cataacaaagttatgctctttggtcatattgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082465 |
cataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
39082564 |
T |
|
| Q |
101 |
gaagaatgccaaggtaggtttattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagaga |
200 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39082565 |
gaagaatgccaaggtttgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttattttgagaga |
39082664 |
T |
|
| Q |
201 |
ttagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaacaatgattatacacattggcaacaata |
300 |
Q |
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| T |
39082665 |
ttagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcatgtggtcaacaatgattatacacattggcaacaata |
39082764 |
T |
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| Q |
301 |
tgcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
371 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39082765 |
tgcaattggtggaagttcgtccccaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
39082835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 31727102 - 31727458
Alignment:
| Q |
1 |
cataacaaagttatgctctttggtcatattgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727102 |
cataacaaagttatgctctttggtcatagtgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
31727201 |
T |
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| Q |
101 |
gaagaatgccaaggtaggtttattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31727202 |
gaagaatgccaaggtaggtttattagttaatttttctctgccacagtaattaagccctacttgccatttgttatatatttttactc-------------- |
31727287 |
T |
|
| Q |
201 |
ttagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaacaatgattatacacattggcaacaata |
300 |
Q |
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||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
31727288 |
ttattcctaacagtttgaaattttttctacacgaatgttgcagatgcaggttcggatactttcatgtggtgaacaatgattacacacattggcaacaata |
31727387 |
T |
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| Q |
301 |
tgcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
371 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31727388 |
tgcaatcggtggaagttcgtcccgaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
31727458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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